CRISPRone

CRISPRone report for GCA_000530915.1_E13

♦ Seq 1: HF925367.1 Clostridium difficile E13 genomic scaffold, 1847_148, whole genome shotgun sequence

⇒Summary: seq-len = 47725 bp; # of CRISPR array = 0; # of cas gene = 7  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17797-27520 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 17797-20205 bp Gene: cd09693:cas5 Type: Type-I Location: 20232-21029 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 21045-22058 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 22078-23544 bp Gene: pfam01881:cas6 Type: other Location: 23549-24286 bp Gene: unk Type: unknown Location: 24600-25058 bp Gene: cas14:cas14 Type: Type-V Location: 25086-26258 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 26411-27520 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: HF925457.1 Clostridium difficile E13 genomic scaffold, 1847_238, whole genome shotgun sequence

⇒Summary: seq-len = 550 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 389-549 bp Zoom in on locus 1 x3 CRISPR array Location: 389-549 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 389-549 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 389-549 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: HF925304.1 Clostridium difficile E13 genomic scaffold, 1847_85, whole genome shotgun sequence

⇒Summary: seq-len = 9808 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 73-3128 bp Zoom in on locus 1 x4 x3 CRISPR array Location: 73-300 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 73-300 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 2967-3128 bp Num of repeats: 3 Spacers: s4-s5 CRISPR array Location: 2967-3128 bp Num of repeats: 3 Spacers: s4-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 73-300 bp]: array | spacers
           [Locus range 2967-3128 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: HF925318.1 Clostridium difficile E13 genomic scaffold, 1847_99, whole genome shotgun sequence

⇒Summary: seq-len = 5816 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12-107 bp Zoom in on locus 1 x2 CRISPR array Location: 12-107 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 12-107 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 12-107 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: HF925324.1 Clostridium difficile E13 genomic scaffold, 1847_105, whole genome shotgun sequence

⇒Summary: seq-len = 7798 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-174 bp Zoom in on locus 1 x3 CRISPR array Location: 2-174 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 2-174 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2-174 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: HF925338.1 Clostridium difficile E13 genomic scaffold, 1847_119, whole genome shotgun sequence

⇒Summary: seq-len = 7349 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-7349 bp Zoom in on locus 1 x2 x2 CRISPR array Location: 1-97 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 1-97 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 7255-7349 bp Num of repeats: 2 Spacers: s2-s2 CRISPR array Location: 7255-7349 bp Num of repeats: 2 Spacers: s2-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-97 bp]: array | spacers
           [Locus range 7255-7349 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)