CRISPRone

CRISPRone report for GCA_000530955.1_T10

♦ Seq 1: HF925596.1 Clostridium difficile T10 genomic scaffold, 1858_115, whole genome shotgun sequence

⇒Summary: seq-len = 23612 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 65-226 bp Zoom in on locus 1 x3 CRISPR array Location: 65-226 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 65-226 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 65-226 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: HF925785.1 Clostridium difficile T10 genomic scaffold, 1858_304, whole genome shotgun sequence

⇒Summary: seq-len = 21930 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10683-18548 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 10683-13091 bp Gene: cd09693:cas5 Type: Type-I Location: 13118-13915 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 13931-14944 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 14964-16439 bp Gene: pfam01881:cas6 Type: other Location: 16444-17181 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 17439-18548 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: HF925836.1 Clostridium difficile T10 genomic scaffold, 1858_355, whole genome shotgun sequence

⇒Summary: seq-len = 15496 bp; # of CRISPR array = 0; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 203-9584 bp Zoom in on locus 1 Gene: cd09725:cas2 Type: universal Location: 203-469 bp Gene: cd09722:cas1 Type: universal Location: 472-1452 bp Gene: pfam01930:cas4 Type: Type-I Location: 1536-1973 bp Gene: COG1203:cas3 Type: Type-I Location: 2021-4342 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 4353-5054 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 5056-5970 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 5972-7849 bp Gene: pfam01881:cas6 Type: other Location: 7855-8649 bp Gene: pfam13280:WYL Type: other Location: 8670-9584 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: HF925634.1 Clostridium difficile T10 genomic scaffold, 1858_153, whole genome shotgun sequence

⇒Summary: seq-len = 6249 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6155-6253 bp Zoom in on locus 1 x2 CRISPR array Location: 6155-6253 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 6155-6253 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6155-6253 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: HF925718.1 Clostridium difficile T10 genomic scaffold, 1858_237, whole genome shotgun sequence

⇒Summary: seq-len = 2148 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 576-669 bp Zoom in on locus 1 x2 CRISPR array Location: 576-669 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 576-669 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 576-669 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)