CRISPRone

CRISPRone report for GCA_000531165.1_E10

♦ Seq 1: HF926081.1 Clostridium difficile E10 genomic scaffold, 1846_140, whole genome shotgun sequence

⇒Summary: seq-len = 4126 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3972-4129 bp Zoom in on locus 1 x3 CRISPR array Location: 3972-4129 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 3972-4129 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3972-4129 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: HF926103.1 Clostridium difficile E10 genomic scaffold, 1846_162, whole genome shotgun sequence

⇒Summary: seq-len = 24256 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17694-24182 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 17694-20102 bp Gene: cd09693:cas5 Type: Type-I Location: 20129-20926 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 20942-21955 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 21974-23440 bp Gene: pfam01881:cas6 Type: other Location: 23445-24182 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: HF926089.1 Clostridium difficile E10 genomic scaffold, 1846_148, whole genome shotgun sequence

⇒Summary: seq-len = 11567 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 216-6968 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 216-2774 bp Gene: cd09693:cas5 Type: Type-I Location: 2798-3538 bp Gene: pfam05107:cas7b Type: Type-I Location: 3540-4529 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 4522-6261 bp Gene: cd09652:cas6 Type: other Location: 6273-6968 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: HF926149.1 Clostridium difficile E10 genomic scaffold, 1846_208, whole genome shotgun sequence

⇒Summary: seq-len = 12547 bp; # of CRISPR array = 0; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 210-9603 bp Zoom in on locus 1 Gene: cd09725:cas2 Type: universal Location: 210-476 bp Gene: cd09722:cas1 Type: universal Location: 479-1459 bp Gene: pfam01930:cas4 Type: Type-I Location: 1462-1980 bp Gene: COG1203:cas3 Type: Type-I Location: 2028-4349 bp Gene: cd09693:cas5 Type: Type-I Location: 4360-5061 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 5063-5977 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 5979-7829 bp Gene: pfam01881:cas6 Type: other Location: 7835-8572 bp Gene: pfam13280:WYL Type: other Location: 8650-9603 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: HF926233.1 Clostridium difficile E10 genomic scaffold, 1846_292, whole genome shotgun sequence

⇒Summary: seq-len = 2475 bp; # of CRISPR array = 0; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 273-2301 bp Zoom in on locus 1 Gene: cd09725:cas2 Type: universal Location: 273-563 bp Gene: cd09722:cas1 Type: universal Location: 774-1781 bp Gene: pfam01930:cas4 Type: Type-I Location: 1807-2301 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: HF926078.1 Clostridium difficile E10 genomic scaffold, 1846_137, whole genome shotgun sequence

⇒Summary: seq-len = 32529 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8292-10336 bp Zoom in on locus 1 Gene: cd09718:cas1 Type: universal Location: 8292-9947 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 9959-10336 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: HF926059.1 Clostridium difficile E10 genomic scaffold, 1846_118, whole genome shotgun sequence

⇒Summary: seq-len = 66015 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-238 bp Zoom in on locus 1 x4 CRISPR array Location: 0-238 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 0-238 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-238 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: HF926186.1 Clostridium difficile E10 genomic scaffold, 1846_245, whole genome shotgun sequence

⇒Summary: seq-len = 2964 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-94 bp Zoom in on locus 1 x2 CRISPR array Location: 0-94 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 0-94 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-94 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: HF926201.1 Clostridium difficile E10 genomic scaffold, 1846_260, whole genome shotgun sequence

⇒Summary: seq-len = 1327 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 825-1117 bp Zoom in on locus 1 x5 CRISPR array Location: 825-1117 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 825-1117 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 825-1117 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: HF926216.1 Clostridium difficile E10 genomic scaffold, 1846_275, whole genome shotgun sequence

⇒Summary: seq-len = 550 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 123-283 bp Zoom in on locus 1 x3 CRISPR array Location: 123-283 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 123-283 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 123-283 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)