CRISPRone

CRISPRone report for GCA_000531255.1_T11

♦ Seq 1: HF926915.1 Clostridium difficile T11 genomic scaffold, 1840_406, whole genome shotgun sequence

⇒Summary: seq-len = 582 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-355 bp Zoom in on locus 1 x6 CRISPR array Location: 0-355 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 0-355 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-355 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: HF926737.1 Clostridium difficile T11 genomic scaffold, 1840_228, whole genome shotgun sequence

⇒Summary: seq-len = 5006 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-4925 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 2-844 bp Gene: cd09693:cas5 Type: Type-I Location: 871-1668 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1684-2697 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2717-4183 bp Gene: pfam01881:cas6 Type: other Location: 4188-4925 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)