CRISPRone

CRISPRone report for GCA_000531295.1_T14

♦ Seq 1: HF927282.1 Clostridium difficile T14 genomic scaffold, 1841_364, whole genome shotgun sequence

⇒Summary: seq-len = 9447 bp; # of CRISPR array = 0; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 201-9444 bp Zoom in on locus 1 Gene: cd09725:cas2 Type: universal Location: 201-467 bp Gene: cd09722:cas1 Type: universal Location: 470-1450 bp Gene: pfam01930:cas4 Type: Type-I Location: 1453-1971 bp Gene: COG1203:cas3 Type: Type-I Location: 2019-4340 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 4351-5052 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 5054-5968 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 5970-7847 bp Gene: pfam01881:cas6 Type: other Location: 7853-8647 bp Gene: pfam13280:WYL Type: other Location: 8668-9444 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: HF927167.1 Clostridium difficile T14 genomic scaffold, 1841_249, whole genome shotgun sequence

⇒Summary: seq-len = 9611 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-159 bp Zoom in on locus 1 x3 CRISPR array Location: 0-159 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 0-159 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-159 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: HF927213.1 Clostridium difficile T14 genomic scaffold, 1841_295, whole genome shotgun sequence

⇒Summary: seq-len = 36233 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1015-8880 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 1015-3423 bp Gene: cd09693:cas5 Type: Type-I Location: 3450-4247 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 4263-5276 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 5296-6771 bp Gene: pfam01881:cas6 Type: other Location: 6776-7513 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 7771-8880 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: HF927095.1 Clostridium difficile T14 genomic scaffold, 1841_177, whole genome shotgun sequence

⇒Summary: seq-len = 7754 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-94 bp Zoom in on locus 1 x2 CRISPR array Location: 0-94 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 0-94 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-94 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)