CRISPRone

CRISPRone report for GCA_000531595.1_E25

♦ Seq 1: HF929048.1 Clostridium difficile E25 genomic scaffold, 1838_269, whole genome shotgun sequence

⇒Summary: seq-len = 24379 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17793-24294 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 17793-20201 bp Gene: cd09693:cas5 Type: Type-I Location: 20228-21025 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 21041-22057 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 22077-23552 bp Gene: pfam01881:cas6 Type: other Location: 23557-24294 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: HF928905.1 Clostridium difficile E25 genomic scaffold, 1838_126, whole genome shotgun sequence

⇒Summary: seq-len = 4029 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-331 bp Zoom in on locus 1 x2 x2 CRISPR array Location: 0-92 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 0-92 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 236-331 bp Num of repeats: 2 Spacers: s2-s2 CRISPR array Location: 236-331 bp Num of repeats: 2 Spacers: s2-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-92 bp]: array | spacers
           [Locus range 236-331 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: HF929090.1 Clostridium difficile E25 genomic scaffold, 1838_311, whole genome shotgun sequence

⇒Summary: seq-len = 16548 bp; # of CRISPR array = 0; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 203-9584 bp Zoom in on locus 1 Gene: cd09725:cas2 Type: universal Location: 203-469 bp Gene: cd09722:cas1 Type: universal Location: 472-1452 bp Gene: pfam01930:cas4 Type: Type-I Location: 1455-1973 bp Gene: cd09641:cas3HD Type: Type-I Location: 2021-4342 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 4353-5054 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 5056-5970 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 5972-7849 bp Gene: pfam01881:cas6 Type: other Location: 7855-8649 bp Gene: pfam13280:WYL Type: other Location: 8670-9584 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: HF928969.1 Clostridium difficile E25 genomic scaffold, 1838_190, whole genome shotgun sequence

⇒Summary: seq-len = 5500 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-159 bp Zoom in on locus 1 x3 CRISPR array Location: 0-159 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 0-159 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-159 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: HF929174.1 Clostridium difficile E25 genomic scaffold, 1838_395, whole genome shotgun sequence

⇒Summary: seq-len = 600 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 376-601 bp Zoom in on locus 1 x4 CRISPR array Location: 376-601 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 376-601 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 376-601 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)