CRISPRone

CRISPRone report for GCA_000531695.1_E9

♦ Seq 1: HF929846.1 Clostridium difficile E9 genomic scaffold, 1845_146, whole genome shotgun sequence

⇒Summary: seq-len = 4460 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4369-4464 bp Zoom in on locus 1 x2 CRISPR array Location: 4369-4464 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 4369-4464 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4369-4464 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: HF930012.1 Clostridium difficile E9 genomic scaffold, 1845_312, whole genome shotgun sequence

⇒Summary: seq-len = 615 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 64-224 bp Zoom in on locus 1 x3 CRISPR array Location: 64-224 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 64-224 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 64-224 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: HF929859.1 Clostridium difficile E9 genomic scaffold, 1845_159, whole genome shotgun sequence

⇒Summary: seq-len = 7410 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-226 bp Zoom in on locus 1 x4 CRISPR array Location: 0-226 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 0-226 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-226 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: HF929907.1 Clostridium difficile E9 genomic scaffold, 1845_207, whole genome shotgun sequence

⇒Summary: seq-len = 98137 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17793-25658 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 17793-20201 bp Gene: cd09693:cas5 Type: Type-I Location: 20228-21025 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 21041-22054 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 22074-23549 bp Gene: pfam01881:cas6 Type: other Location: 23554-24291 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 24549-25658 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: HF929996.1 Clostridium difficile E9 genomic scaffold, 1845_296, whole genome shotgun sequence

⇒Summary: seq-len = 1650 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-153 bp Zoom in on locus 1 x3 CRISPR array Location: 0-153 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 0-153 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-153 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)