CRISPRone

CRISPRone report for GCA_000558345.1_MDR_VRFPA09

♦ Seq 1: JAAO01000010.1 Pseudomonas aeruginosa VRFPA09 ContigID10, whole genome shotgun sequence

⇒Summary: seq-len = 6165520 bp; # of CRISPR array = 3; # of cas gene = 12  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1539852-1540300 bp 2 Locus 2: 2733942-2744250 bp 3 Locus 3: 2799719-2805699 bp 4 Locus 4: 3737045-3739201 bp Zoom in on locus 1 x8 Zoom in on locus 2 x17 x13 Zoom in on locus 3 Zoom in on locus 4 CRISPR array Location: 1539852-1540300 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 1539852-1540300 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 2733942-2734930 bp Num of repeats: 17 Spacers: s8-s23 CRISPR array Location: 2733942-2734930 bp Num of repeats: 17 Spacers: s8-s23 Gene: cd09739:cas6f Type: other Location: 2735113-2735676 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 2735680-2736708 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 2736719-2737144 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 2737141-2737701 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 2737688-2738992 bp Gene: COG1203:cas3 Type: Type-I Location: 2739050-2742280 bp Gene: cd09718:cas1 Type: universal Location: 2742277-2743251 bp CRISPR array Location: 2743503-2744250 bp Num of repeats: 13 Spacers: s24-s35 CRISPR array Location: 2743503-2744250 bp Num of repeats: 13 Spacers: s24-s35 Gene: cls001593:casR Type: Type-I Location: 2799719-2800198 bp Gene: unk Type: unknown Location: 2800315-2800746 bp Gene: cls001593:casR Type: Type-I Location: 2800857-2801336 bp Gene: unk Type: unknown Location: 2801453-2802784 bp Gene: unk Type: unknown Location: 2802907-2805195 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 2805376-2805699 bp Gene: COG2378:WYL Type: other Location: 3737045-3738016 bp Gene: unk Type: unknown Location: 3738125-3738811 bp Gene: cd09693:cas5 Type: Type-I Location: 3738839-3739201 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1539852-1540300 bp]: array | spacers
           [Locus range 2733942-2734930 bp]: array | spacers
           [Locus range 2743503-2744250 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JAAO01000058.1 Pseudomonas aeruginosa VRFPA09 ContigID58, whole genome shotgun sequence

⇒Summary: seq-len = 9569 bp; # of CRISPR array = 0; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3180-9151 bp Zoom in on locus 1 Gene: mkCas0115:csx3 Type: other Location: 3180-4892 bp Gene: pfam13280:WYL Type: other Location: 4951-5967 bp Gene: pfam13280:WYL Type: other Location: 8276-9151 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)