CRISPRone

CRISPRone report for GCA_000568215.1_ASM56821v1

♦ Seq 1: JALF01000001.1 Pseudomonas aeruginosa SG17M Scaffold1, whole genome shotgun sequence

⇒Summary: seq-len = 4791879 bp; # of CRISPR array = 4; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2316999-2317387 bp 2 Locus 2: 2403519-2413674 bp 3 Locus 3: 3977468-3978216 bp Zoom in on locus 1 x7 Zoom in on locus 2 x3 x19 Zoom in on locus 3 x13 CRISPR array Location: 2316999-2317387 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 2316999-2317387 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 2403519-2403667 bp Num of repeats: 3 Spacers: s7-s8 CRISPR array Location: 2403519-2403667 bp Num of repeats: 3 Spacers: s7-s8 Gene: cd09718:cas1 Type: universal Location: 2403918-2404892 bp Gene: COG1203:cas3 Type: Type-I Location: 2404889-2408119 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 2408530-2409807 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 2409794-2410777 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 2410788-2411816 bp Gene: cd09739:cas6f Type: other Location: 2411820-2412383 bp CRISPR array Location: 2412567-2413674 bp Num of repeats: 19 Spacers: s9-s26 CRISPR array Location: 2412567-2413674 bp Num of repeats: 19 Spacers: s9-s26 CRISPR array Location: 3977468-3978216 bp Num of repeats: 13 Spacers: s27-s38 CRISPR array Location: 3977468-3978216 bp Num of repeats: 13 Spacers: s27-s38 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 2316999-2317387 bp]: array | spacers
           [Locus range 2403519-2403667 bp]: array | spacers
           [Locus range 2412567-2413674 bp]: array | spacers
           [Locus range 3977468-3978216 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)