CRISPRone

CRISPRone report for GCA_000568235.2_CF_PA39_1.0

♦ Seq 1: JDVE01000010.1 Pseudomonas aeruginosa CF_PA39 scaffold10, whole genome shotgun sequence

⇒Summary: seq-len = 181543 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 60967-62317 bp Zoom in on locus 1 x23 CRISPR array Location: 60967-62317 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 60967-62317 bp Num of repeats: 23 Spacers: s1-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 60967-62317 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JDVE01000025.1 Pseudomonas aeruginosa CF_PA39 scaffold25, whole genome shotgun sequence

⇒Summary: seq-len = 89410 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38694-49435 bp Zoom in on locus 1 x29 x7 CRISPR array Location: 38694-40405 bp Num of repeats: 29 Spacers: s1-s28 CRISPR array Location: 38694-40405 bp Num of repeats: 29 Spacers: s1-s28 Gene: cd09739:cas6f Type: other Location: 40647-41210 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 41214-42242 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 42253-43236 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 43223-44527 bp Gene: COG1203:cas3 Type: Type-I Location: 44585-47815 bp Gene: cd09718:cas1 Type: universal Location: 47812-48786 bp CRISPR array Location: 49048-49435 bp Num of repeats: 7 Spacers: s29-s34 CRISPR array Location: 49048-49435 bp Num of repeats: 7 Spacers: s29-s34 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38694-40405 bp]: array | spacers
           [Locus range 49048-49435 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JDVE01000023.1 Pseudomonas aeruginosa CF_PA39 scaffold23, whole genome shotgun sequence

⇒Summary: seq-len = 93829 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 47741-49943 bp Zoom in on locus 1 Gene: COG2378:WYL Type: other Location: 47741-48712 bp Gene: unk Type: unknown Location: 48822-49508 bp Gene: cd09693:cas5 Type: Type-I Location: 49536-49943 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)