CRISPRone

CRISPRone report for GCA_000572265.1_PA01_BK1

♦ Seq 1: JBTQ01000157.1 Pseudomonas aeruginosa BK1 contig_158, whole genome shotgun sequence

⇒Summary: seq-len = 802 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 631-779 bp Zoom in on locus 1 x3 CRISPR array Location: 631-779 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 631-779 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 631-779 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JBTQ01000064.1 Pseudomonas aeruginosa BK1 contig_64, whole genome shotgun sequence

⇒Summary: seq-len = 9325 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36-9333 bp Zoom in on locus 1 x5 x8 CRISPR array Location: 36-304 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 36-304 bp Num of repeats: 5 Spacers: s1-s4 Gene: cd09739:cas6f Type: other Location: 488-1051 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 1055-2083 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 2094-2630 bp Gene: pfam09614:cas5f Type: Subtype-I-F Location: 2596-3075 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 3062-4366 bp Gene: COG1203:cas3 Type: Type-I Location: 4424-6805 bp Gene: cd09673:cas3f Type: Subtype-I-F Location: 6727-7653 bp Gene: cd09718:cas1 Type: universal Location: 7650-8624 bp CRISPR array Location: 8886-9333 bp Num of repeats: 8 Spacers: s5-s11 CRISPR array Location: 8886-9333 bp Num of repeats: 8 Spacers: s5-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 36-304 bp]: array | spacers
           [Locus range 8886-9333 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JBTQ01000144.1 Pseudomonas aeruginosa BK1 contig_145, whole genome shotgun sequence

⇒Summary: seq-len = 1695 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1302-1630 bp Zoom in on locus 1 x6 CRISPR array Location: 1302-1630 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 1302-1630 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1302-1630 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)