CRISPRone

CRISPRone report for GCA_000586575.1_WHS13_S12

♦ Seq 1: AZSH01000012.1 Clostridioides difficile 5.3 scaffold4.1, whole genome shotgun sequence

⇒Summary: seq-len = 474035 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 150862-158727 bp 2 Locus 2: 232948-233504 bp Zoom in on locus 1 Zoom in on locus 2 x9 Gene: cd09641:cas3HD Type: Type-I Location: 150862-153270 bp Gene: cd09693:cas5 Type: Type-I Location: 153297-154094 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 154110-155123 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 155143-156618 bp Gene: pfam01881:cas6 Type: other Location: 156623-157360 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 157618-158727 bp CRISPR array Location: 232948-233504 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 232948-233504 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 232948-233504 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AZSH01000013.1 Clostridioides difficile 5.3 scaffold2.1, whole genome shotgun sequence

⇒Summary: seq-len = 786725 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 499272-499365 bp Zoom in on locus 1 x2 CRISPR array Location: 499272-499365 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 499272-499365 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 499272-499365 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AZSH01000011.1 Clostridioides difficile 5.3 scaffold1.1, whole genome shotgun sequence

⇒Summary: seq-len = 1447561 bp; # of CRISPR array = 8; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 190464-190891 bp 2 Locus 2: 394425-394847 bp 3 Locus 3: 511196-511955 bp 4 Locus 4: 601478-603453 bp 5 Locus 5: 741608-743348 bp 6 Locus 6: 1090701-1090926 bp 7 Locus 7: 1432262-1432488 bp Zoom in on locus 1 x7 Zoom in on locus 2 x7 Zoom in on locus 3 x12 Zoom in on locus 4 x9 x13 Zoom in on locus 5 x27 Zoom in on locus 6 x4 Zoom in on locus 7 x4 CRISPR array Location: 190464-190891 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 190464-190891 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 394425-394847 bp Num of repeats: 7 Spacers: s7-s12 CRISPR array Location: 394425-394847 bp Num of repeats: 7 Spacers: s7-s12 CRISPR array Location: 511196-511955 bp Num of repeats: 12 Spacers: s13-s23 CRISPR array Location: 511196-511955 bp Num of repeats: 12 Spacers: s13-s23 CRISPR array Location: 601478-602033 bp Num of repeats: 9 Spacers: s24-s31 CRISPR array Location: 601478-602033 bp Num of repeats: 9 Spacers: s24-s31 CRISPR array Location: 602635-603453 bp Num of repeats: 13 Spacers: s32-s43 CRISPR array Location: 602635-603453 bp Num of repeats: 13 Spacers: s32-s43 CRISPR array Location: 741608-743348 bp Num of repeats: 27 Spacers: s44-s69 CRISPR array Location: 741608-743348 bp Num of repeats: 27 Spacers: s44-s69 CRISPR array Location: 1090701-1090926 bp Num of repeats: 4 Spacers: s70-s72 CRISPR array Location: 1090701-1090926 bp Num of repeats: 4 Spacers: s70-s72 CRISPR array Location: 1432262-1432488 bp Num of repeats: 4 Spacers: s73-s75 CRISPR array Location: 1432262-1432488 bp Num of repeats: 4 Spacers: s73-s75 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 190464-190891 bp]: array | spacers
           [Locus range 394425-394847 bp]: array | spacers
           [Locus range 511196-511955 bp]: array | spacers
           [Locus range 601478-602033 bp]: array | spacers
           [Locus range 602635-603453 bp]: array | spacers
           [Locus range 741608-743348 bp]: array | spacers
           [Locus range 1090701-1090926 bp]: array | spacers
           [Locus range 1432262-1432488 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)