CRISPRone

CRISPRone report for GCA_000598165.1_ASM59816v1

♦ Seq 1: JGCU01000231.1 Bacteroides fragilis str. 3976T7 gbf3976T7.contig.233, whole genome shotgun sequence

⇒Summary: seq-len = 47037 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 120-3733 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 120-788 bp Gene: unk Type: unknown Location: 791-1564 bp Gene: unk Type: unknown Location: 1572-2837 bp Gene: pfam13280:WYL Type: other Location: 2834-3733 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JGCU01000257.1 Bacteroides fragilis str. 3976T7 gbf3976T7.contig.259, whole genome shotgun sequence

⇒Summary: seq-len = 4615 bp; # of CRISPR array = 1; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 995-3415 bp Zoom in on locus 1 x14 CRISPR array Location: 995-2038 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 995-2038 bp Num of repeats: 14 Spacers: s1-s13 Gene: pfam09827:cas2 Type: universal Location: 2147-2479 bp Gene: cd09720:cas1 Type: universal Location: 2483-3415 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 995-2038 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JGCU01000304.1 Bacteroides fragilis str. 3976T7 gbf3976T7.contig.306, whole genome shotgun sequence

⇒Summary: seq-len = 3451 bp; # of CRISPR array = 0; # of cas gene = 4  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 473-3448 bp Zoom in on locus 1 Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 473-1612 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 1632-2471 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 2484-2894 bp Gene: cd09726:csm3gr7 Type: Subtype-III-D Location: 2891-3448 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JGCU01000162.1 Bacteroides fragilis str. 3976T7 gbf3976T7.contig.163, whole genome shotgun sequence

⇒Summary: seq-len = 2603 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-432 bp Zoom in on locus 1 x7 CRISPR array Location: 0-432 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 0-432 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-432 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: JGCU01000407.1 Bacteroides fragilis str. 3976T7 gbf3976T7.contig.410, whole genome shotgun sequence

⇒Summary: seq-len = 1246 bp; # of CRISPR array = 0; # of cas gene = 1  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-1221 bp Zoom in on locus 1 Gene: pfam12469:cas10 Type: Subtype-III-B Location: 1-1221 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: JGCU01000310.1 Bacteroides fragilis str. 3976T7 gbf3976T7.contig.312, whole genome shotgun sequence

⇒Summary: seq-len = 18729 bp; # of CRISPR array = 0; # of cas gene = 3  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3352-13481 bp Zoom in on locus 1 Gene: cd09710:cas3 Type: Subtype-I-D Location: 3352-9492 bp Gene: pfam13280:WYL Type: other Location: 9531-10541 bp Gene: unk Type: unknown Location: 11307-11483 bp Gene: mkCas0123:csx19 Type: Subtype-III-D Location: 11820-13481 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: JGCU01000405.1 Bacteroides fragilis str. 3976T7 gbf3976T7.contig.408, whole genome shotgun sequence

⇒Summary: seq-len = 662 bp; # of CRISPR array = 0; # of cas gene = 1  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-660 bp Zoom in on locus 1 Gene: cd09634:cas1 Type: universal Location: 1-660 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)