CRISPRone

CRISPRone report for GCA_000598185.2_ASM59818v2

♦ Seq 1: JGCV01000105.1 Bacteroides fragilis str. 3986T(B)10 gbf3986TB10.contig.104, whole genome shotgun sequence

⇒Summary: seq-len = 22696 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-389 bp Zoom in on locus 1 x6 CRISPR array Location: 0-389 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 0-389 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-389 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JGCV01000197.1 Bacteroides fragilis str. 3986T(B)10 gbf3986TB10.contig.198, whole genome shotgun sequence

⇒Summary: seq-len = 383 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 230-404 bp Zoom in on locus 1 x3 CRISPR array Location: 230-404 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 230-404 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 230-404 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JGCV01000269.1 Bacteroides fragilis str. 3986T(B)10 gbf3986TB10.contig.272, whole genome shotgun sequence

⇒Summary: seq-len = 5241 bp; # of CRISPR array = 0; # of cas gene = 6  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-5240 bp Zoom in on locus 1 Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 1-366 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 371-2173 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 2166-3305 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 3325-4164 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 4177-4587 bp Gene: cd09726:csm3gr7 Type: Subtype-III-D Location: 4590-5240 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JGCV01000218.1 Bacteroides fragilis str. 3986T(B)10 gbf3986TB10.contig.219, whole genome shotgun sequence

⇒Summary: seq-len = 2562 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 96-2559 bp Zoom in on locus 1 Gene: cd09634:cas1 Type: universal Location: 96-2366 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 2386-2559 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: JGCV01000153.1 Bacteroides fragilis str. 3986T(B)10 gbf3986TB10.contig.154, whole genome shotgun sequence

⇒Summary: seq-len = 93058 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 40607-44220 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 40607-41275 bp Gene: unk Type: unknown Location: 41278-42051 bp Gene: unk Type: unknown Location: 42059-43324 bp Gene: pfam13280:WYL Type: other Location: 43321-44220 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)