CRISPRone

CRISPRone report for GCA_000598205.1_ASM59820v1

♦ Seq 1: JGCZ01000224.1 Bacteroides fragilis str. 3988 T1 gbf3988T1.contig.226, whole genome shotgun sequence

⇒Summary: seq-len = 1988 bp; # of CRISPR array = 0; # of cas gene = 2  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-1986 bp Zoom in on locus 1 Gene: pfam12469:cas10 Type: Subtype-III-B Location: 3-1199 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 1204-1986 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JGCZ01000101.1 Bacteroides fragilis str. 3988 T1 gbf3988T1.contig.103, whole genome shotgun sequence

⇒Summary: seq-len = 24639 bp; # of CRISPR array = 1; # of cas gene = 1  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 52-2449 bp Zoom in on locus 1 x24 Gene: cd09725:cas2 Type: universal Location: 52-342 bp CRISPR array Location: 790-2449 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 790-2449 bp Num of repeats: 24 Spacers: s1-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 790-2449 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JGCZ01000439.1 Bacteroides fragilis str. 3988 T1 gbf3988T1.contig.447, whole genome shotgun sequence

⇒Summary: seq-len = 2739 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-2736 bp Zoom in on locus 1 Gene: pfam03787:csm3gr7 Type: Type-III Location: 3-506 bp Gene: cd09634:cas1 Type: universal Location: 526-2736 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JGCZ01000149.1 Bacteroides fragilis str. 3988 T1 gbf3988T1.contig.151, whole genome shotgun sequence

⇒Summary: seq-len = 64899 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38279-41892 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 38279-38947 bp Gene: unk Type: unknown Location: 38950-39723 bp Gene: unk Type: unknown Location: 39731-40996 bp Gene: pfam13280:WYL Type: other Location: 40993-41892 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: JGCZ01000243.1 Bacteroides fragilis str. 3988 T1 gbf3988T1.contig.246, whole genome shotgun sequence

⇒Summary: seq-len = 2229 bp; # of CRISPR array = 0; # of cas gene = 4  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-2228 bp Zoom in on locus 1 Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 3-533 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 553-1392 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 1405-1815 bp Gene: cd09726:csm3gr7 Type: Subtype-III-D Location: 1812-2228 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)