CRISPRone

CRISPRone report for GCA_000598225.1_ASM59822v1

♦ Seq 1: JGDA01000241.1 Bacteroides fragilis str. 3996 N(B) 6 gbf3996NB6.contig.240, whole genome shotgun sequence

⇒Summary: seq-len = 46651 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19730-28906 bp Zoom in on locus 1 x21 CRISPR array Location: 19730-21045 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 19730-21045 bp Num of repeats: 21 Spacers: s1-s20 Gene: cd09725:cas2 Type: universal Location: 21258-21521 bp Gene: cd09722:cas1 Type: universal Location: 21524-22537 bp Gene: pfam01930:cas4 Type: Type-I Location: 22534-23046 bp Gene: mkCas0088:cas7 Type: Subtype-I-B Location: 23111-24169 bp Gene: mkCas0111:cas8b6 Type: Subtype-I-B Location: 24182-25507 bp Gene: COG1203:cas3 Type: Type-I Location: 25511-27670 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 27660-28223 bp Gene: cd09652:cas6 Type: other Location: 28235-28906 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 19730-21045 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JGDA01000278.1 Bacteroides fragilis str. 3996 N(B) 6 gbf3996NB6.contig.277, whole genome shotgun sequence

⇒Summary: seq-len = 122101 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 899-8702 bp Zoom in on locus 1 x13 CRISPR array Location: 899-1866 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 899-1866 bp Num of repeats: 13 Spacers: s1-s12 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 1976-2308 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 2312-3244 bp Gene: unk Type: unknown Location: 3364-3672 bp Gene: unk Type: unknown Location: 3739-4263 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 4279-8589 bp antiRepeat Location: 8657-8702 bp Strand: - Match length: 26 bp Mismatch: 21 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 899-1866 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JGDA01000261.1 Bacteroides fragilis str. 3996 N(B) 6 gbf3996NB6.contig.260, whole genome shotgun sequence

⇒Summary: seq-len = 148005 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19287-22900 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 19287-19955 bp Gene: unk Type: unknown Location: 19958-20731 bp Gene: unk Type: unknown Location: 20739-22004 bp Gene: pfam13280:WYL Type: other Location: 22001-22900 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)