CRISPRone

CRISPRone report for GCA_000598245.1_ASM59824v1

♦ Seq 1: JGDD01000113.1 Bacteroides fragilis str. DS-166 gbfDS166.contig.116, whole genome shotgun sequence

⇒Summary: seq-len = 141808 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 40721-44334 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 40721-41389 bp Gene: unk Type: unknown Location: 41392-42165 bp Gene: unk Type: unknown Location: 42173-43438 bp Gene: pfam13280:WYL Type: other Location: 43435-44334 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JGDD01000016.1 Bacteroides fragilis str. DS-166 gbfDS166.contig.16, whole genome shotgun sequence

⇒Summary: seq-len = 8366 bp; # of CRISPR array = 0; # of cas gene = 7  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-7820 bp Zoom in on locus 1 Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 3-362 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 367-2169 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 2162-3301 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 3321-4160 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 4173-4583 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 4586-5530 bp Gene: cd09634:cas1 Type: universal Location: 5550-7820 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JGDD01000088.1 Bacteroides fragilis str. DS-166 gbfDS166.contig.91, whole genome shotgun sequence

⇒Summary: seq-len = 44286 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19948-20053 bp Zoom in on locus 1 x2 CRISPR array Location: 19948-20053 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 19948-20053 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 19948-20053 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JGDD01000097.1 Bacteroides fragilis str. DS-166 gbfDS166.contig.100, whole genome shotgun sequence

⇒Summary: seq-len = 23486 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 212-1087 bp Zoom in on locus 1 x13 CRISPR array Location: 212-1087 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 212-1087 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 212-1087 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)