CRISPRone

CRISPRone report for GCA_000598265.1_ASM59826v1

♦ Seq 1: JGCM01000040.1 Bacteroides fragilis str. 1007-1-F #8 gbf10071F8.contig.39, whole genome shotgun sequence

⇒Summary: seq-len = 35912 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19395-21107 bp Zoom in on locus 1 Gene: mkCas0179:cas2 Type: universal Location: 19395-19709 bp Gene: unk Type: unknown Location: 19709-20086 bp Gene: pfam00078:RT Type: other Location: 20067-21107 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JGCM01000101.1 Bacteroides fragilis str. 1007-1-F #8 gbf10071F8.contig.100, whole genome shotgun sequence

⇒Summary: seq-len = 23499 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 219-1305 bp Zoom in on locus 1 x16 CRISPR array Location: 219-1305 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 219-1305 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 219-1305 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JGCM01000257.1 Bacteroides fragilis str. 1007-1-F #8 gbf10071F8.contig.256, whole genome shotgun sequence

⇒Summary: seq-len = 8064 bp; # of CRISPR array = 0; # of cas gene = 7  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-8007 bp Zoom in on locus 1 Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 1-549 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 554-2356 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 2349-3488 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 3508-4347 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 4360-4770 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 4773-5717 bp Gene: cd09634:cas1 Type: universal Location: 5737-8007 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JGCM01000277.1 Bacteroides fragilis str. 1007-1-F #8 gbf10071F8.contig.276, whole genome shotgun sequence

⇒Summary: seq-len = 824 bp; # of CRISPR array = 1; # of cas gene = 1  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 24-823 bp Zoom in on locus 1 x7 CRISPR array Location: 24-437 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 24-437 bp Num of repeats: 7 Spacers: s1-s6 Gene: pfam09827:cas2 Type: universal Location: 650-823 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 24-437 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: JGCM01000108.1 Bacteroides fragilis str. 1007-1-F #8 gbf10071F8.contig.107, whole genome shotgun sequence

⇒Summary: seq-len = 22289 bp; # of CRISPR array = 0; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-4621 bp Zoom in on locus 1 Gene: mkCas0111:cas8b6 Type: Subtype-I-B Location: 2-1222 bp Gene: COG1203:cas3 Type: Type-I Location: 1226-3385 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 3375-3938 bp Gene: cd09652:cas6 Type: other Location: 3950-4621 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: JGCM01000106.1 Bacteroides fragilis str. 1007-1-F #8 gbf10071F8.contig.105, whole genome shotgun sequence

⇒Summary: seq-len = 1228 bp; # of CRISPR array = 1; # of cas gene = 1  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 43-1227 bp Zoom in on locus 1 x13 CRISPR array Location: 43-841 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 43-841 bp Num of repeats: 13 Spacers: s1-s12 Gene: pfam09827:cas2 Type: universal Location: 1054-1227 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 43-841 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: JGCM01000107.1 Bacteroides fragilis str. 1007-1-F #8 gbf10071F8.contig.106, whole genome shotgun sequence

⇒Summary: seq-len = 3528 bp; # of CRISPR array = 1; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-3527 bp Zoom in on locus 1 x7 CRISPR array Location: 0-409 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 0-409 bp Num of repeats: 7 Spacers: s1-s6 Gene: cd09725:cas2 Type: universal Location: 622-885 bp Gene: cd09722:cas1 Type: universal Location: 888-1901 bp Gene: pfam01930:cas4 Type: Type-I Location: 1898-2410 bp Gene: mkCas0088:cas7 Type: Subtype-I-B Location: 2475-3527 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 0-409 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: JGCM01000141.1 Bacteroides fragilis str. 1007-1-F #8 gbf10071F8.contig.140, whole genome shotgun sequence

⇒Summary: seq-len = 85063 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 72196-75809 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 72196-72864 bp Gene: unk Type: unknown Location: 72867-73640 bp Gene: unk Type: unknown Location: 73648-74913 bp Gene: pfam13280:WYL Type: other Location: 74910-75809 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)