CRISPRone

CRISPRone report for GCA_000598305.1_ASM59830v1

♦ Seq 1: JGCR01000257.1 Bacteroides fragilis str. 3774 T13 gbf3774T13.contig.262, whole genome shotgun sequence

⇒Summary: seq-len = 22781 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 32-839 bp Zoom in on locus 1 x12 CRISPR array Location: 32-839 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 32-839 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 32-839 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JGCR01000046.1 Bacteroides fragilis str. 3774 T13 gbf3774T13.contig.46, whole genome shotgun sequence

⇒Summary: seq-len = 6826 bp; # of CRISPR array = 0; # of cas gene = 6  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 112-6824 bp Zoom in on locus 1 Gene: pfam12469:cas10 Type: Subtype-III-B Location: 112-1914 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 1907-3046 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 3066-3905 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 3918-4328 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 4325-5275 bp Gene: pfam00078:RT Type: other Location: 5295-6824 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JGCR01000100.1 Bacteroides fragilis str. 3774 T13 gbf3774T13.contig.101, whole genome shotgun sequence

⇒Summary: seq-len = 728 bp; # of CRISPR array = 0; # of cas gene = 1  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-632 bp Zoom in on locus 1 Gene: cd09634:cas1 Type: universal Location: 3-632 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JGCR01000329.1 Bacteroides fragilis str. 3774 T13 gbf3774T13.contig.336, whole genome shotgun sequence

⇒Summary: seq-len = 136033 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1100-8939 bp Zoom in on locus 1 x15 CRISPR array Location: 1100-2218 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1100-2218 bp Num of repeats: 15 Spacers: s1-s14 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 2326-2658 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 2662-3594 bp Gene: unk Type: unknown Location: 3714-4022 bp Gene: unk Type: unknown Location: 4089-4613 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 4629-8939 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1100-2218 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: JGCR01000306.1 Bacteroides fragilis str. 3774 T13 gbf3774T13.contig.313, whole genome shotgun sequence

⇒Summary: seq-len = 49512 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 179-3792 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 179-847 bp Gene: unk Type: unknown Location: 850-1623 bp Gene: unk Type: unknown Location: 1631-2896 bp Gene: pfam13280:WYL Type: other Location: 2893-3792 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)