CRISPRone

CRISPRone report for GCA_000598325.1_ASM59832v1

♦ Seq 1: JGCS01000345.1 Bacteroides fragilis str. 3783N1-2 gbf3783N12.contig.345, whole genome shotgun sequence

⇒Summary: seq-len = 530 bp; # of CRISPR array = 0; # of cas gene = 1  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-529 bp Zoom in on locus 1 Gene: COG1518:cas1 Type: universal Location: 2-529 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JGCS01000260.1 Bacteroides fragilis str. 3783N1-2 gbf3783N12.contig.260, whole genome shotgun sequence

⇒Summary: seq-len = 83335 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 192-8070 bp Zoom in on locus 1 x14 CRISPR array Location: 192-1235 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 192-1235 bp Num of repeats: 14 Spacers: s1-s13 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 1344-1676 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 1680-2612 bp Gene: unk Type: unknown Location: 2732-3040 bp Gene: unk Type: unknown Location: 3107-3631 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 3647-7957 bp antiRepeat Location: 8025-8070 bp Strand: - Match length: 26 bp Mismatch: 21 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 192-1235 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JGCS01000380.1 Bacteroides fragilis str. 3783N1-2 gbf3783N12.contig.380, whole genome shotgun sequence

⇒Summary: seq-len = 410 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-432 bp Zoom in on locus 1 x7 CRISPR array Location: 0-432 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 0-432 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-432 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JGCS01000280.1 Bacteroides fragilis str. 3783N1-2 gbf3783N12.contig.280, whole genome shotgun sequence

⇒Summary: seq-len = 17847 bp; # of CRISPR array = 0; # of cas gene = 3  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3348-13477 bp Zoom in on locus 1 Gene: cd09710:cas3 Type: Subtype-I-D Location: 3348-9488 bp Gene: pfam13280:WYL Type: other Location: 9527-10537 bp Gene: unk Type: unknown Location: 11303-11479 bp Gene: mkCas0123:csx19 Type: Subtype-III-D Location: 11816-13477 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: JGCS01000354.1 Bacteroides fragilis str. 3783N1-2 gbf3783N12.contig.354, whole genome shotgun sequence

⇒Summary: seq-len = 4712 bp; # of CRISPR array = 0; # of cas gene = 5  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 52-4711 bp Zoom in on locus 1 Gene: pfam12469:cas10 Type: Subtype-III-B Location: 52-1854 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 1847-2986 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 3006-3845 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 3858-4268 bp Gene: cd09726:csm3gr7 Type: Subtype-III-D Location: 4265-4711 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: JGCS01000221.1 Bacteroides fragilis str. 3783N1-2 gbf3783N12.contig.221, whole genome shotgun sequence

⇒Summary: seq-len = 82956 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 49123-52736 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 49123-49791 bp Gene: unk Type: unknown Location: 49794-50567 bp Gene: unk Type: unknown Location: 50575-51840 bp Gene: pfam13280:WYL Type: other Location: 51837-52736 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)