CRISPRone

CRISPRone report for GCA_000598345.1_ASM59834v1

♦ Seq 1: JGCT01000394.1 Bacteroides fragilis str. 3783N2-1 gbf3783N21.contig.397, whole genome shotgun sequence

⇒Summary: seq-len = 3451 bp; # of CRISPR array = 0; # of cas gene = 4  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 473-3448 bp Zoom in on locus 1 Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 473-1612 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 1632-2471 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 2484-2894 bp Gene: cd09726:csm3gr7 Type: Subtype-III-D Location: 2891-3448 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JGCT01000263.1 Bacteroides fragilis str. 3783N2-1 gbf3783N21.contig.264, whole genome shotgun sequence

⇒Summary: seq-len = 18729 bp; # of CRISPR array = 0; # of cas gene = 3  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3352-13481 bp Zoom in on locus 1 Gene: cd09710:cas3 Type: Subtype-I-D Location: 3352-9492 bp Gene: pfam13280:WYL Type: other Location: 9531-10541 bp Gene: unk Type: unknown Location: 11307-11483 bp Gene: mkCas0123:csx19 Type: Subtype-III-D Location: 11820-13481 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JGCT01000153.1 Bacteroides fragilis str. 3783N2-1 gbf3783N21.contig.153, whole genome shotgun sequence

⇒Summary: seq-len = 2603 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-432 bp Zoom in on locus 1 x7 CRISPR array Location: 0-432 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 0-432 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-432 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JGCT01000219.1 Bacteroides fragilis str. 3783N2-1 gbf3783N21.contig.220, whole genome shotgun sequence

⇒Summary: seq-len = 47099 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 182-3795 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 182-850 bp Gene: unk Type: unknown Location: 853-1626 bp Gene: unk Type: unknown Location: 1634-2899 bp Gene: pfam13280:WYL Type: other Location: 2896-3795 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: JGCT01000319.1 Bacteroides fragilis str. 3783N2-1 gbf3783N21.contig.321, whole genome shotgun sequence

⇒Summary: seq-len = 662 bp; # of CRISPR array = 0; # of cas gene = 1  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-660 bp Zoom in on locus 1 Gene: cd09634:cas1 Type: universal Location: 1-660 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: JGCT01000409.1 Bacteroides fragilis str. 3783N2-1 gbf3783N21.contig.412, whole genome shotgun sequence

⇒Summary: seq-len = 1246 bp; # of CRISPR array = 0; # of cas gene = 1  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-1221 bp Zoom in on locus 1 Gene: pfam12469:cas10 Type: Subtype-III-B Location: 1-1221 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: JGCT01000246.1 Bacteroides fragilis str. 3783N2-1 gbf3783N21.contig.247, whole genome shotgun sequence

⇒Summary: seq-len = 3737 bp; # of CRISPR array = 1; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 117-2537 bp Zoom in on locus 1 x14 CRISPR array Location: 117-1160 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 117-1160 bp Num of repeats: 14 Spacers: s1-s13 Gene: pfam09827:cas2 Type: universal Location: 1269-1601 bp Gene: cd09720:cas1 Type: universal Location: 1605-2537 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 117-1160 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)