CRISPRone

CRISPRone report for GCA_000598365.1_ASM59836v1

♦ Seq 1: JGCY01000066.1 Bacteroides fragilis str. 3988T(B)14 gbf3988TB14.contig.67, whole genome shotgun sequence

⇒Summary: seq-len = 369 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17-336 bp Zoom in on locus 1 x5 CRISPR array Location: 17-336 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 17-336 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17-336 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JGCY01000370.1 Bacteroides fragilis str. 3988T(B)14 gbf3988TB14.contig.371, whole genome shotgun sequence

⇒Summary: seq-len = 61630 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38999-42612 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 38999-39667 bp Gene: unk Type: unknown Location: 39670-40443 bp Gene: unk Type: unknown Location: 40451-41716 bp Gene: pfam13280:WYL Type: other Location: 41713-42612 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JGCY01000312.1 Bacteroides fragilis str. 3988T(B)14 gbf3988TB14.contig.313, whole genome shotgun sequence

⇒Summary: seq-len = 4165 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 281-2004 bp Zoom in on locus 1 x25 CRISPR array Location: 281-2004 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 281-2004 bp Num of repeats: 25 Spacers: s1-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 281-2004 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JGCY01000083.1 Bacteroides fragilis str. 3988T(B)14 gbf3988TB14.contig.84, whole genome shotgun sequence

⇒Summary: seq-len = 4777 bp; # of CRISPR array = 0; # of cas gene = 5  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-4643 bp Zoom in on locus 1 Gene: cd09726:csm3gr7 Type: Subtype-III-D Location: 2-424 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 427-837 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 850-1689 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 1709-2848 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 2841-4643 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: JGCY01000071.1 Bacteroides fragilis str. 3988T(B)14 gbf3988TB14.contig.72, whole genome shotgun sequence

⇒Summary: seq-len = 347 bp; # of CRISPR array = 0; # of cas gene = 1  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-258 bp Zoom in on locus 1 Gene: cd09725:cas2 Type: universal Location: 1-258 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: JGCY01000104.1 Bacteroides fragilis str. 3988T(B)14 gbf3988TB14.contig.105, whole genome shotgun sequence

⇒Summary: seq-len = 666 bp; # of CRISPR array = 0; # of cas gene = 1  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-663 bp Zoom in on locus 1 Gene: cd09634:cas1 Type: universal Location: 1-663 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)