CRISPRone

CRISPRone report for GCA_000598385.1_ASM59838v1

♦ Seq 1: JGDC01000121.1 Bacteroides fragilis str. 3998 T(B) 4 gbf3998TB4.contig.125, whole genome shotgun sequence

⇒Summary: seq-len = 1303 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 52-1300 bp Zoom in on locus 1 Gene: mkCas0088:cas7 Type: Subtype-I-B Location: 52-1110 bp Gene: pfam01930:cas4 Type: Type-I Location: 1175-1300 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JGDC01000308.1 Bacteroides fragilis str. 3998 T(B) 4 gbf3998TB4.contig.313, whole genome shotgun sequence

⇒Summary: seq-len = 788 bp; # of CRISPR array = 0; # of cas gene = 1  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-787 bp Zoom in on locus 1 Gene: cd09722:cas1 Type: universal Location: 2-787 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JGDC01000368.1 Bacteroides fragilis str. 3998 T(B) 4 gbf3998TB4.contig.373, whole genome shotgun sequence

⇒Summary: seq-len = 59437 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13684-17297 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 13684-14352 bp Gene: unk Type: unknown Location: 14355-15128 bp Gene: unk Type: unknown Location: 15136-16401 bp Gene: pfam13280:WYL Type: other Location: 16398-17297 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JGDC01000305.1 Bacteroides fragilis str. 3998 T(B) 4 gbf3998TB4.contig.310, whole genome shotgun sequence

⇒Summary: seq-len = 30756 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30661-30755 bp Zoom in on locus 1 x2 CRISPR array Location: 30661-30755 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 30661-30755 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 30661-30755 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: JGDC01000399.1 Bacteroides fragilis str. 3998 T(B) 4 gbf3998TB4.contig.404, whole genome shotgun sequence

⇒Summary: seq-len = 67493 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3309-10653 bp Zoom in on locus 1 x7 CRISPR array Location: 3309-3817 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 3309-3817 bp Num of repeats: 7 Spacers: s1-s6 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 3927-4259 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 4263-5195 bp Gene: unk Type: unknown Location: 5315-5623 bp Gene: unk Type: unknown Location: 5690-6214 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 6230-10540 bp antiRepeat Location: 10608-10653 bp Strand: - Match length: 26 bp Mismatch: 21 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 3309-3817 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: JGDC01000309.1 Bacteroides fragilis str. 3998 T(B) 4 gbf3998TB4.contig.314, whole genome shotgun sequence

⇒Summary: seq-len = 4398 bp; # of CRISPR array = 0; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-4396 bp Zoom in on locus 1 Gene: mkCas0111:cas8b6 Type: Subtype-I-B Location: 2-1234 bp Gene: COG1203:cas3 Type: Type-I Location: 1238-3397 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 3387-3950 bp Gene: cd09652:cas6 Type: other Location: 3962-4396 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: JGDC01000307.1 Bacteroides fragilis str. 3998 T(B) 4 gbf3998TB4.contig.312, whole genome shotgun sequence

⇒Summary: seq-len = 635 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44-588 bp Zoom in on locus 1 x9 CRISPR array Location: 44-588 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 44-588 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 44-588 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: JGDC01000306.1 Bacteroides fragilis str. 3998 T(B) 4 gbf3998TB4.contig.311, whole genome shotgun sequence

⇒Summary: seq-len = 318 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-331 bp Zoom in on locus 1 x6 CRISPR array Location: 0-331 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 0-331 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-331 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)