CRISPRone

CRISPRone report for GCA_000598405.1_ASM59840v1

♦ Seq 1: JGCP01000157.1 Bacteroides fragilis str. 3397 T10 gbf3397T10.contig.161, whole genome shotgun sequence

⇒Summary: seq-len = 518 bp; # of CRISPR array = 0; # of cas gene = 1  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 229-516 bp Zoom in on locus 1 Gene: cd09725:cas2 Type: universal Location: 229-516 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JGCP01001251.1 Bacteroides fragilis str. 3397 T10 gbf3397T10.contig.1277, whole genome shotgun sequence

⇒Summary: seq-len = 1352 bp; # of CRISPR array = 0; # of cas gene = 2  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-1349 bp Zoom in on locus 1 Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 2-328 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 333-1349 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JGCP01000249.1 Bacteroides fragilis str. 3397 T10 gbf3397T10.contig.255, whole genome shotgun sequence

⇒Summary: seq-len = 3261 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 50-3260 bp Zoom in on locus 1 Gene: pfam03787:csm3gr7 Type: Type-III Location: 50-994 bp Gene: cd09634:cas1 Type: universal Location: 1014-3260 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JGCP01002477.1 Bacteroides fragilis str. 3397 T10 gbf3397T10.contig.2523, whole genome shotgun sequence

⇒Summary: seq-len = 21349 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 128-2139 bp Zoom in on locus 1 x29 CRISPR array Location: 128-2139 bp Num of repeats: 29 Spacers: s1-s28 CRISPR array Location: 128-2139 bp Num of repeats: 29 Spacers: s1-s28 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 128-2139 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: JGCP01001163.1 Bacteroides fragilis str. 3397 T10 gbf3397T10.contig.1187, whole genome shotgun sequence

⇒Summary: seq-len = 1553 bp; # of CRISPR array = 0; # of cas gene = 3  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-1550 bp Zoom in on locus 1 Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 2-316 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 336-1175 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 1188-1550 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: JGCP01002537.1 Bacteroides fragilis str. 3397 T10 gbf3397T10.contig.2583, whole genome shotgun sequence

⇒Summary: seq-len = 36455 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22753-26366 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 22753-23421 bp Gene: unk Type: unknown Location: 23424-24197 bp Gene: unk Type: unknown Location: 24205-25470 bp Gene: pfam13280:WYL Type: other Location: 25467-26366 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)