CRISPRone

CRISPRone report for GCA_000598465.1_ASM59846v1

♦ Seq 1: JGCX01000164.1 Bacteroides fragilis str. 3986 T(B)9 gbf3986TB9.contig.163, whole genome shotgun sequence

⇒Summary: seq-len = 3606 bp; # of CRISPR array = 0; # of cas gene = 3  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 511-3603 bp Zoom in on locus 1 Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 511-762 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 1377-1919 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 1924-3603 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JGCX01000066.1 Bacteroides fragilis str. 3986 T(B)9 gbf3986TB9.contig.65, whole genome shotgun sequence

⇒Summary: seq-len = 63695 bp; # of CRISPR array = 1; # of cas gene = 6  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 109-7030 bp Zoom in on locus 1 x8 Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 109-1248 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 1268-2107 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 2120-2530 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 2527-3477 bp Gene: cd09634:cas1 Type: universal Location: 3497-5767 bp Gene: cd09725:cas2 Type: universal Location: 5761-6051 bp CRISPR array Location: 6499-7030 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 6499-7030 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 6499-7030 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JGCX01000107.1 Bacteroides fragilis str. 3986 T(B)9 gbf3986TB9.contig.106, whole genome shotgun sequence

⇒Summary: seq-len = 112074 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25188-28801 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 25188-25856 bp Gene: unk Type: unknown Location: 25859-26632 bp Gene: unk Type: unknown Location: 26640-27905 bp Gene: pfam13280:WYL Type: other Location: 27902-28801 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)