CRISPRone

CRISPRone report for GCA_000598485.1_ASM59848v1

♦ Seq 1: JGDB01000187.1 Bacteroides fragilis str. 3998T(B)3 gbf3998TB3.contig.190, whole genome shotgun sequence

⇒Summary: seq-len = 3787 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23-3418 bp Zoom in on locus 1 Gene: COG1203:cas3 Type: Type-I Location: 23-2182 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 2172-2735 bp Gene: cd09652:cas6 Type: other Location: 2747-3418 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JGDB01000254.1 Bacteroides fragilis str. 3998T(B)3 gbf3998TB3.contig.258, whole genome shotgun sequence

⇒Summary: seq-len = 49644 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 15819-19432 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 15819-16487 bp Gene: unk Type: unknown Location: 16490-17263 bp Gene: unk Type: unknown Location: 17271-18536 bp Gene: pfam13280:WYL Type: other Location: 18533-19432 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JGDB01000298.1 Bacteroides fragilis str. 3998T(B)3 gbf3998TB3.contig.303, whole genome shotgun sequence

⇒Summary: seq-len = 7977 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3422-7976 bp Zoom in on locus 1 Gene: pfam00078:RT Type: other Location: 3422-5230 bp Gene: unk Type: unknown Location: 5781-6947 bp Gene: unk Type: unknown Location: 7220-7465 bp Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 7494-7976 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JGDB01000186.1 Bacteroides fragilis str. 3998T(B)3 gbf3998TB3.contig.189, whole genome shotgun sequence

⇒Summary: seq-len = 25822 bp; # of CRISPR array = 1; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23214-25820 bp Zoom in on locus 1 x21 CRISPR array Location: 23214-24529 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 23214-24529 bp Num of repeats: 21 Spacers: s1-s20 Gene: cd09725:cas2 Type: universal Location: 24742-25005 bp Gene: cd09722:cas1 Type: universal Location: 25008-25820 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 23214-24529 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: JGDB01000383.1 Bacteroides fragilis str. 3998T(B)3 gbf3998TB3.contig.390, whole genome shotgun sequence

⇒Summary: seq-len = 1601 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-1598 bp Zoom in on locus 1 Gene: mkCas0088:cas7 Type: Subtype-I-B Location: 3-821 bp Gene: pfam01930:cas4 Type: Type-I Location: 886-1398 bp Gene: cd09722:cas1 Type: universal Location: 1395-1598 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: JGDB01000278.1 Bacteroides fragilis str. 3998T(B)3 gbf3998TB3.contig.282, whole genome shotgun sequence

⇒Summary: seq-len = 154566 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2654-9998 bp Zoom in on locus 1 x7 CRISPR array Location: 2654-3162 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 2654-3162 bp Num of repeats: 7 Spacers: s1-s6 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 3272-3604 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 3608-4540 bp Gene: unk Type: unknown Location: 4660-4968 bp Gene: unk Type: unknown Location: 5035-5559 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 5575-9885 bp antiRepeat Location: 9953-9998 bp Strand: - Match length: 26 bp Mismatch: 21 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 2654-3162 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)