CRISPRone

CRISPRone report for GCA_000598545.2_ASM59854v2

♦ Seq 1: JGDK01000141.1 Bacteroides fragilis str. 1007-1-F #4 gbf10071F4.contig.140, whole genome shotgun sequence

⇒Summary: seq-len = 203375 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 106070-109683 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 106070-106738 bp Gene: unk Type: unknown Location: 106741-107514 bp Gene: unk Type: unknown Location: 107522-108787 bp Gene: pfam13280:WYL Type: other Location: 108784-109683 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JGDK01000119.1 Bacteroides fragilis str. 1007-1-F #4 gbf10071F4.contig.118, whole genome shotgun sequence

⇒Summary: seq-len = 22151 bp; # of CRISPR array = 0; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-4669 bp Zoom in on locus 1 Gene: mkCas0111:cas8b6 Type: Subtype-I-B Location: 2-1270 bp Gene: COG1203:cas3 Type: Type-I Location: 1274-3433 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 3423-3986 bp Gene: cd09652:cas6 Type: other Location: 3998-4669 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JGDK01000118.1 Bacteroides fragilis str. 1007-1-F #4 gbf10071F4.contig.117, whole genome shotgun sequence

⇒Summary: seq-len = 29577 bp; # of CRISPR array = 1; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25447-29497 bp Zoom in on locus 1 x15 CRISPR array Location: 25447-26373 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 25447-26373 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09725:cas2 Type: universal Location: 26586-26849 bp Gene: cd09722:cas1 Type: universal Location: 26852-27865 bp Gene: pfam01930:cas4 Type: Type-I Location: 27862-28419 bp Gene: mkCas0088:cas7 Type: Subtype-I-B Location: 28439-29497 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 25447-26373 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JGDK01000116.1 Bacteroides fragilis str. 1007-1-F #4 gbf10071F4.contig.115, whole genome shotgun sequence

⇒Summary: seq-len = 66731 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29743-44520 bp Zoom in on locus 1 x16 Gene: cls000004:cas6 Type: other Location: 29743-30474 bp Gene: unk Type: unknown Location: 30492-31118 bp Gene: unk Type: unknown Location: 31094-31873 bp Gene: cash17:cash17 Type: Type- Location: 31918-33345 bp Gene: unk Type: unknown Location: 33342-33821 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 33835-35244 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 35249-37051 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 37044-38183 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 38203-39042 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 39055-39465 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 39462-40412 bp Gene: cd09634:cas1 Type: universal Location: 40432-42702 bp Gene: cd09725:cas2 Type: universal Location: 42696-42986 bp CRISPR array Location: 43434-44520 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 43434-44520 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 43434-44520 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: JGDK01000097.1 Bacteroides fragilis str. 1007-1-F #4 gbf10071F4.contig.96, whole genome shotgun sequence

⇒Summary: seq-len = 441791 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 116434-118146 bp Zoom in on locus 1 Gene: mkCas0179:cas2 Type: universal Location: 116434-116748 bp Gene: unk Type: unknown Location: 116748-117125 bp Gene: pfam00078:RT Type: other Location: 117106-118146 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)