CRISPRone

CRISPRone report for GCA_000598605.1_ASM59860v1

♦ Seq 1: JGDR01000081.1 Bacteroides fragilis str. 3783N1-8 gbf3783N18.contig.80, whole genome shotgun sequence

⇒Summary: seq-len = 147316 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 509-8387 bp Zoom in on locus 1 x14 CRISPR array Location: 509-1552 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 509-1552 bp Num of repeats: 14 Spacers: s1-s13 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 1661-1993 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 1997-2929 bp Gene: unk Type: unknown Location: 3049-3357 bp Gene: unk Type: unknown Location: 3424-3948 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 3964-8274 bp antiRepeat Location: 8342-8387 bp Strand: - Match length: 26 bp Mismatch: 21 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 509-1552 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JGDR01000052.1 Bacteroides fragilis str. 3783N1-8 gbf3783N18.contig.51, whole genome shotgun sequence

⇒Summary: seq-len = 484059 bp; # of CRISPR array = 1; # of cas gene = 13  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16096-26225 bp 2 Locus 2: 438068-452214 bp Zoom in on locus 1 Zoom in on locus 2 x7 Gene: mkCas0123:csx19 Type: Subtype-III-D Location: 16096-17757 bp Gene: unk Type: unknown Location: 17792-17953 bp Gene: unk Type: unknown Location: 18094-18270 bp Gene: pfam13280:WYL Type: other Location: 19036-20046 bp Gene: cd09710:cas3 Type: Subtype-I-D Location: 20085-26225 bp Gene: cls000004:cas6 Type: other Location: 438068-438799 bp Gene: unk Type: unknown Location: 438817-439443 bp Gene: unk Type: unknown Location: 439419-440198 bp Gene: cash17:cash17 Type: Type- Location: 440243-441670 bp Gene: unk Type: unknown Location: 441667-442146 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 442160-443569 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 443574-445376 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 445369-446508 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 446528-447367 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 447380-447790 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 447787-448737 bp Gene: cd09634:cas1 Type: universal Location: 448757-451027 bp Gene: cd09725:cas2 Type: universal Location: 451021-451311 bp CRISPR array Location: 451759-452214 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 451759-452214 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 451759-452214 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JGDR01000068.1 Bacteroides fragilis str. 3783N1-8 gbf3783N18.contig.67, whole genome shotgun sequence

⇒Summary: seq-len = 186591 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 85956-89569 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 85956-86624 bp Gene: unk Type: unknown Location: 86627-87400 bp Gene: unk Type: unknown Location: 87408-88673 bp Gene: pfam13280:WYL Type: other Location: 88670-89569 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)