CRISPRone

CRISPRone report for GCA_000598665.1_ASM59866v1

♦ Seq 1: JGDX01000101.1 Bacteroides fragilis str. S23 R14 gbfS23R14.contig.100, whole genome shotgun sequence

⇒Summary: seq-len = 1162 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 304-1193 bp Zoom in on locus 1 x12 CRISPR array Location: 304-1193 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 304-1193 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 304-1193 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JGDX01000102.1 Bacteroides fragilis str. S23 R14 gbfS23R14.contig.101, whole genome shotgun sequence

⇒Summary: seq-len = 122135 bp; # of CRISPR array = 0; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 472-7198 bp Zoom in on locus 1 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 472-804 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 808-1740 bp Gene: unk Type: unknown Location: 1860-2168 bp Gene: unk Type: unknown Location: 2235-2759 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 2775-7085 bp antiRepeat Location: 7153-7198 bp Strand: - Match length: 26 bp Mismatch: 21 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JGDX01000110.1 Bacteroides fragilis str. S23 R14 gbfS23R14.contig.109, whole genome shotgun sequence

⇒Summary: seq-len = 96897 bp; # of CRISPR array = 0; # of cas gene = 1  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 64801-65082 bp Zoom in on locus 1 Gene: pfam09827:cas2 Type: universal Location: 64801-65082 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JGDX01000087.1 Bacteroides fragilis str. S23 R14 gbfS23R14.contig.86, whole genome shotgun sequence

⇒Summary: seq-len = 66740 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3387-7000 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 3387-4055 bp Gene: unk Type: unknown Location: 4058-4831 bp Gene: unk Type: unknown Location: 4839-6104 bp Gene: pfam13280:WYL Type: other Location: 6101-7000 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: JGDX01000100.1 Bacteroides fragilis str. S23 R14 gbfS23R14.contig.99, whole genome shotgun sequence

⇒Summary: seq-len = 1377 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 620-1356 bp Zoom in on locus 1 x10 CRISPR array Location: 620-1356 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 620-1356 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 620-1356 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: JGDX01000061.1 Bacteroides fragilis str. S23 R14 gbfS23R14.contig.60, whole genome shotgun sequence

⇒Summary: seq-len = 20917 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 189-1707 bp Zoom in on locus 1 x22 CRISPR array Location: 189-1707 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 189-1707 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 189-1707 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: JGDX01000243.1 Bacteroides fragilis str. S23 R14 gbfS23R14.contig.242, whole genome shotgun sequence

⇒Summary: seq-len = 10073 bp; # of CRISPR array = 0; # of cas gene = 8  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 197-10072 bp Zoom in on locus 1 Gene: cd09634:cas1 Type: universal Location: 197-2467 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 2487-3431 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 3434-3844 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 3857-4696 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 4716-5855 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 5848-7650 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 7655-9064 bp Gene: unk Type: unknown Location: 9078-9557 bp Gene: cash17:cash17 Type: Type- Location: 9554-10072 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)