CRISPRone

CRISPRone report for GCA_000598705.1_ASM59870v1

♦ Seq 1: JGED01000020.1 Bacteroides fragilis str. 1009-4-F #10 gbf10094F10.contig.19, whole genome shotgun sequence

⇒Summary: seq-len = 219768 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 124854-128467 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 124854-125522 bp Gene: unk Type: unknown Location: 125525-126298 bp Gene: unk Type: unknown Location: 126306-127571 bp Gene: pfam13280:WYL Type: other Location: 127568-128467 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JGED01000029.1 Bacteroides fragilis str. 1009-4-F #10 gbf10094F10.contig.28, whole genome shotgun sequence

⇒Summary: seq-len = 270264 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23-9278 bp Zoom in on locus 1 x32 CRISPR array Location: 23-2443 bp Num of repeats: 32 Spacers: s1-s31 CRISPR array Location: 23-2443 bp Num of repeats: 32 Spacers: s1-s31 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 2552-2884 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 2888-3820 bp Gene: unk Type: unknown Location: 3940-4248 bp Gene: unk Type: unknown Location: 4315-4839 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 4855-9165 bp antiRepeat Location: 9233-9278 bp Strand: - Match length: 26 bp Mismatch: 21 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 23-2443 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JGED01000046.1 Bacteroides fragilis str. 1009-4-F #10 gbf10094F10.contig.45, whole genome shotgun sequence

⇒Summary: seq-len = 1421 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 299-1421 bp Zoom in on locus 1 x15 CRISPR array Location: 299-1421 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 299-1421 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 299-1421 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JGED01000037.1 Bacteroides fragilis str. 1009-4-F #10 gbf10094F10.contig.36, whole genome shotgun sequence

⇒Summary: seq-len = 660 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-661 bp Zoom in on locus 1 x9 CRISPR array Location: 1-661 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 1-661 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-661 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: JGED01000021.1 Bacteroides fragilis str. 1009-4-F #10 gbf10094F10.contig.20, whole genome shotgun sequence

⇒Summary: seq-len = 1218737 bp; # of CRISPR array = 1; # of cas gene = 7  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 289539-299668 bp 2 Locus 2: 850340-852723 bp Zoom in on locus 1 Zoom in on locus 2 x10 Gene: mkCas0123:csx19 Type: Subtype-III-D Location: 289539-291200 bp Gene: unk Type: unknown Location: 291235-291396 bp Gene: unk Type: unknown Location: 291537-291713 bp Gene: pfam13280:WYL Type: other Location: 292479-293489 bp Gene: cd09710:cas3 Type: Subtype-I-D Location: 293528-299668 bp CRISPR array Location: 850340-850949 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 850340-850949 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09725:cas2 Type: universal Location: 851162-851425 bp Gene: cd09722:cas1 Type: universal Location: 851428-851667 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 851660-852040 bp Gene: cd09652:cas6 Type: other Location: 852052-852723 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 850340-850949 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: JGED01000038.1 Bacteroides fragilis str. 1009-4-F #10 gbf10094F10.contig.37, whole genome shotgun sequence

⇒Summary: seq-len = 1421 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 299-1421 bp Zoom in on locus 1 x15 CRISPR array Location: 299-1421 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 299-1421 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 299-1421 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: JGED01000027.1 Bacteroides fragilis str. 1009-4-F #10 gbf10094F10.contig.26, whole genome shotgun sequence

⇒Summary: seq-len = 1945 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1263-1925 bp Zoom in on locus 1 x9 CRISPR array Location: 1263-1925 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 1263-1925 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1263-1925 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)