CRISPRone

CRISPRone report for GCA_000598765.2_ASM59876v2

♦ Seq 1: JGEV01000038.1 Bacteroides fragilis str. S38L3 gbfS38L3.contig.37, whole genome shotgun sequence

⇒Summary: seq-len = 314997 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1266-9598 bp Zoom in on locus 1 x20 CRISPR array Location: 1266-2763 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 1266-2763 bp Num of repeats: 20 Spacers: s1-s19 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 2872-3204 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 3208-4140 bp Gene: unk Type: unknown Location: 4260-4568 bp Gene: unk Type: unknown Location: 4635-5159 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 5175-9485 bp antiRepeat Location: 9553-9598 bp Strand: - Match length: 26 bp Mismatch: 21 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1266-2763 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JGEV01000024.1 Bacteroides fragilis str. S38L3 gbfS38L3.contig.23, whole genome shotgun sequence

⇒Summary: seq-len = 896013 bp; # of CRISPR array = 2; # of cas gene = 14  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 535164-550855 bp 2 Locus 2: 689005-691321 bp Zoom in on locus 1 x30 Zoom in on locus 2 x9 Gene: cls000004:cas6 Type: other Location: 535164-535832 bp Gene: unk Type: unknown Location: 535850-536476 bp Gene: unk Type: unknown Location: 536452-537231 bp Gene: cash17:cash17 Type: Type- Location: 537276-538703 bp Gene: unk Type: unknown Location: 538700-539179 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 539193-540602 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 540607-542409 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 542402-543541 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 543561-544400 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 544414-544824 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 544827-545771 bp Gene: cd09634:cas1 Type: universal Location: 545791-548061 bp Gene: cd09725:cas2 Type: universal Location: 548055-548345 bp CRISPR array Location: 548793-550855 bp Num of repeats: 30 Spacers: s1-s29 CRISPR array Location: 548793-550855 bp Num of repeats: 30 Spacers: s1-s29 CRISPR array Location: 689005-689547 bp Num of repeats: 9 Spacers: s30-s37 CRISPR array Location: 689005-689547 bp Num of repeats: 9 Spacers: s30-s37 Gene: cd09725:cas2 Type: universal Location: 689760-690023 bp Gene: cd09722:cas1 Type: universal Location: 690026-690265 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 690258-690638 bp Gene: cd09652:cas6 Type: other Location: 690650-691321 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 548793-550855 bp]: array | spacers
           [Locus range 689005-689547 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JGEV01000033.1 Bacteroides fragilis str. S38L3 gbfS38L3.contig.32, whole genome shotgun sequence

⇒Summary: seq-len = 550368 bp; # of CRISPR array = 0; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8421-10552 bp 2 Locus 2: 132222-135835 bp Zoom in on locus 1 Zoom in on locus 2 Gene: mkCas0090:PD-DExK Type: other Location: 8421-9212 bp Gene: unk Type: unknown Location: 9261-10118 bp Gene: cd09680:cas10 Type: Type-III Location: 10337-10552 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 132222-132890 bp Gene: unk Type: unknown Location: 132893-133666 bp Gene: unk Type: unknown Location: 133674-134939 bp Gene: pfam13280:WYL Type: other Location: 134936-135835 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)