CRISPRone

CRISPRone report for GCA_000598805.1_ASM59880v1

♦ Seq 1: JGDG01000481.1 Bacteroides fragilis str. Ds-233 gbfDs233.contig.494, whole genome shotgun sequence

⇒Summary: seq-len = 49300 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-3629 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 1-684 bp Gene: unk Type: unknown Location: 687-1460 bp Gene: unk Type: unknown Location: 1468-2733 bp Gene: pfam13280:WYL Type: other Location: 2730-3629 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JGDG01000097.1 Bacteroides fragilis str. Ds-233 gbfDs233.contig.97, whole genome shotgun sequence

⇒Summary: seq-len = 2774 bp; # of CRISPR array = 0; # of cas gene = 4  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-2772 bp Zoom in on locus 1 Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 1-1134 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 1154-1993 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 2006-2416 bp Gene: cd09661:cmr6gr7 Type: Subtype-III-B Location: 2413-2772 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JGDG01000025.1 Bacteroides fragilis str. Ds-233 gbfDs233.contig.24, whole genome shotgun sequence

⇒Summary: seq-len = 990 bp; # of CRISPR array = 0; # of cas gene = 1  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8-988 bp Zoom in on locus 1 Gene: pfam12469:cas10 Type: Subtype-III-B Location: 8-988 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JGDG01000394.1 Bacteroides fragilis str. Ds-233 gbfDs233.contig.405, whole genome shotgun sequence

⇒Summary: seq-len = 2422 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-157 bp Zoom in on locus 1 x3 CRISPR array Location: 0-157 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 0-157 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-157 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)