CRISPRone

CRISPRone report for GCA_000598885.1_ASM59888v1

♦ Seq 1: JGEC01000018.1 Bacteroides fragilis str. 1007-1-F #9 gbf10071F9.contig.17, whole genome shotgun sequence

⇒Summary: seq-len = 818835 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 658224-673001 bp Zoom in on locus 1 x16 Gene: cls000004:cas6 Type: other Location: 658224-658955 bp Gene: unk Type: unknown Location: 658973-659599 bp Gene: unk Type: unknown Location: 659575-660354 bp Gene: cash17:cash17 Type: Type- Location: 660399-661826 bp Gene: unk Type: unknown Location: 661823-662302 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 662316-663725 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 663730-665532 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 665525-666664 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 666684-667523 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 667536-667946 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 667943-668893 bp Gene: cd09634:cas1 Type: universal Location: 668913-671183 bp Gene: cd09725:cas2 Type: universal Location: 671177-671467 bp CRISPR array Location: 671915-673001 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 671915-673001 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 671915-673001 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JGEC01000028.1 Bacteroides fragilis str. 1007-1-F #9 gbf10071F9.contig.27, whole genome shotgun sequence

⇒Summary: seq-len = 609272 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 120585-124198 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 120585-121253 bp Gene: unk Type: unknown Location: 121256-122029 bp Gene: unk Type: unknown Location: 122037-123302 bp Gene: pfam13280:WYL Type: other Location: 123299-124198 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JGEC01000019.1 Bacteroides fragilis str. 1007-1-F #9 gbf10071F9.contig.18, whole genome shotgun sequence

⇒Summary: seq-len = 49526 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23257-32044 bp Zoom in on locus 1 x15 CRISPR array Location: 23257-24183 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 23257-24183 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09725:cas2 Type: universal Location: 24396-24659 bp Gene: cd09722:cas1 Type: universal Location: 24662-25675 bp Gene: pfam01930:cas4 Type: Type-I Location: 25672-26184 bp Gene: mkCas0088:cas7 Type: Subtype-I-B Location: 26249-27307 bp Gene: mkCas0111:cas8b6 Type: Subtype-I-B Location: 27320-28645 bp Gene: COG1203:cas3 Type: Type-I Location: 28649-30808 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 30798-31361 bp Gene: cd09652:cas6 Type: other Location: 31373-32044 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 23257-24183 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JGEC01000014.1 Bacteroides fragilis str. 1007-1-F #9 gbf10071F9.contig.13, whole genome shotgun sequence

⇒Summary: seq-len = 437698 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 116434-118146 bp Zoom in on locus 1 Gene: mkCas0179:cas2 Type: universal Location: 116434-116748 bp Gene: unk Type: unknown Location: 116748-117125 bp Gene: pfam00078:RT Type: other Location: 117106-118146 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)