CRISPRone

CRISPRone report for GCA_000599025.1_ASM59902v1

♦ Seq 1: JGEQ01000074.1 Bacteroides fragilis str. S36L5 gbfS36L5.contig.73, whole genome shotgun sequence

⇒Summary: seq-len = 97933 bp; # of CRISPR array = 1; # of cas gene = 8  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1068-12313 bp Zoom in on locus 1 x24 Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 1068-2477 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 2482-4284 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 4277-5416 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 5436-6275 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 6288-6698 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 6695-7645 bp Gene: cd09634:cas1 Type: universal Location: 7665-9935 bp Gene: cd09725:cas2 Type: universal Location: 9929-10219 bp CRISPR array Location: 10667-12313 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 10667-12313 bp Num of repeats: 24 Spacers: s1-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 10667-12313 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JGEQ01000067.1 Bacteroides fragilis str. S36L5 gbfS36L5.contig.66, whole genome shotgun sequence

⇒Summary: seq-len = 106569 bp; # of CRISPR array = 0; # of cas gene = 5  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-20451 bp Zoom in on locus 1 Gene: pfam00078:RT Type: other Location: 3-1382 bp Gene: pfam00078:RT Type: other Location: 6348-8159 bp Gene: pfam00078:RT Type: other Location: 12142-13869 bp Gene: unk Type: unknown Location: 13850-14680 bp Gene: unk Type: unknown Location: 14859-15008 bp Gene: pfam00078:RT Type: other Location: 15264-16925 bp Gene: unk Type: unknown Location: 16922-18061 bp Gene: unk Type: unknown Location: 18239-18427 bp Gene: pfam00078:RT Type: other Location: 18619-20451 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JGEQ01000086.1 Bacteroides fragilis str. S36L5 gbfS36L5.contig.85, whole genome shotgun sequence

⇒Summary: seq-len = 268329 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 177592-181205 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 177592-178260 bp Gene: unk Type: unknown Location: 178263-179036 bp Gene: unk Type: unknown Location: 179044-180309 bp Gene: pfam13280:WYL Type: other Location: 180306-181205 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JGEQ01000068.1 Bacteroides fragilis str. S36L5 gbfS36L5.contig.67, whole genome shotgun sequence

⇒Summary: seq-len = 77013 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 60110-60353 bp Zoom in on locus 1 x4 CRISPR array Location: 60110-60353 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 60110-60353 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 60110-60353 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)