CRISPRone

CRISPRone report for GCA_000599045.1_ASM59904v1

♦ Seq 1: JGET01000017.1 Bacteroides fragilis str. S6R5 gbfS6R5.contig.16, whole genome shotgun sequence

⇒Summary: seq-len = 700185 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 229304-229547 bp Zoom in on locus 1 x4 CRISPR array Location: 229304-229547 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 229304-229547 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 229304-229547 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JGET01000020.1 Bacteroides fragilis str. S6R5 gbfS6R5.contig.19, whole genome shotgun sequence

⇒Summary: seq-len = 161157 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 27830-41695 bp Zoom in on locus 1 x3 Gene: cls000004:cas6 Type: other Location: 27830-28561 bp Gene: unk Type: unknown Location: 28579-29205 bp Gene: unk Type: unknown Location: 29181-29960 bp Gene: cash17:cash17 Type: Type- Location: 30005-31432 bp Gene: unk Type: unknown Location: 31429-31908 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 31922-33331 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 33336-35138 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 35131-36270 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 36290-37129 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 37142-37552 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 37549-38499 bp Gene: cd09634:cas1 Type: universal Location: 38519-40789 bp Gene: cd09725:cas2 Type: universal Location: 40783-41073 bp CRISPR array Location: 41521-41695 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 41521-41695 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 41521-41695 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JGET01000029.1 Bacteroides fragilis str. S6R5 gbfS6R5.contig.28, whole genome shotgun sequence

⇒Summary: seq-len = 199452 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 94068-97681 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 94068-94736 bp Gene: unk Type: unknown Location: 94739-95512 bp Gene: unk Type: unknown Location: 95520-96785 bp Gene: pfam13280:WYL Type: other Location: 96782-97681 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)