CRISPRone

CRISPRone report for GCA_000599065.2_ASM59906v2

♦ Seq 1: JGEU01000043.1 Bacteroides fragilis str. 3783N1-6 gbf3783N16.contig.42, whole genome shotgun sequence

⇒Summary: seq-len = 175638 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 75087-78700 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 75087-75755 bp Gene: unk Type: unknown Location: 75758-76531 bp Gene: unk Type: unknown Location: 76539-77804 bp Gene: pfam13280:WYL Type: other Location: 77801-78700 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JGEU01000053.1 Bacteroides fragilis str. 3783N1-6 gbf3783N16.contig.52, whole genome shotgun sequence

⇒Summary: seq-len = 147802 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 995-8873 bp Zoom in on locus 1 x14 CRISPR array Location: 995-2038 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 995-2038 bp Num of repeats: 14 Spacers: s1-s13 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 2147-2479 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 2483-3415 bp Gene: unk Type: unknown Location: 3535-3843 bp Gene: unk Type: unknown Location: 3910-4434 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 4450-8760 bp antiRepeat Location: 8828-8873 bp Strand: - Match length: 26 bp Mismatch: 21 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 995-2038 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JGEU01000034.1 Bacteroides fragilis str. 3783N1-6 gbf3783N16.contig.33, whole genome shotgun sequence

⇒Summary: seq-len = 1327911 bp; # of CRISPR array = 1; # of cas gene = 13  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 848231-862313 bp 2 Locus 2: 1274219-1284348 bp Zoom in on locus 1 x7 Zoom in on locus 2 CRISPR array Location: 848231-848685 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 848231-848685 bp Num of repeats: 7 Spacers: s1-s6 Gene: cd09725:cas2 Type: universal Location: 849133-849423 bp Gene: cd09634:cas1 Type: universal Location: 849417-851687 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 851707-852651 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 852654-853064 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 853077-853916 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 853936-855075 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 855068-856870 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 856875-858284 bp Gene: unk Type: unknown Location: 858298-858777 bp Gene: cash17:cash17 Type: Type- Location: 858774-860201 bp Gene: unk Type: unknown Location: 860246-861025 bp Gene: unk Type: unknown Location: 861001-861627 bp Gene: cls000004:cas6 Type: other Location: 861645-862313 bp Gene: cd09710:cas3 Type: Subtype-I-D Location: 1274219-1280359 bp Gene: pfam13280:WYL Type: other Location: 1280398-1281408 bp Gene: unk Type: unknown Location: 1282174-1282350 bp Gene: mkCas0123:csx19 Type: Subtype-III-D Location: 1282687-1284348 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 848231-848685 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)