CRISPRone

CRISPRone report for GCA_000599085.1_ASM59908v1

♦ Seq 1: JGDF01000092.1 Bacteroides fragilis str. DS-71 gbfDS71.contig.92, whole genome shotgun sequence

⇒Summary: seq-len = 22499 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 40-632 bp Zoom in on locus 1 x9 CRISPR array Location: 40-632 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 40-632 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 40-632 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JGDF01000148.1 Bacteroides fragilis str. DS-71 gbfDS71.contig.148, whole genome shotgun sequence

⇒Summary: seq-len = 84362 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 809-9146 bp Zoom in on locus 1 x20 CRISPR array Location: 809-2311 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 809-2311 bp Num of repeats: 20 Spacers: s1-s19 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 2420-2752 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 2756-3688 bp Gene: unk Type: unknown Location: 3808-4116 bp Gene: unk Type: unknown Location: 4183-4707 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 4723-9033 bp antiRepeat Location: 9101-9146 bp Strand: - Match length: 26 bp Mismatch: 21 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 809-2311 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JGDF01000124.1 Bacteroides fragilis str. DS-71 gbfDS71.contig.124, whole genome shotgun sequence

⇒Summary: seq-len = 90145 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 88-3701 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 88-756 bp Gene: unk Type: unknown Location: 759-1532 bp Gene: unk Type: unknown Location: 1540-2805 bp Gene: pfam13280:WYL Type: other Location: 2802-3701 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JGDF01000235.1 Bacteroides fragilis str. DS-71 gbfDS71.contig.237, whole genome shotgun sequence

⇒Summary: seq-len = 7570 bp; # of CRISPR array = 0; # of cas gene = 6  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 43-7496 bp Zoom in on locus 1 Gene: pfam12469:cas10 Type: Subtype-III-B Location: 43-1845 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 1838-2977 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 2997-3836 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 3849-4259 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 4262-5206 bp Gene: cd09634:cas1 Type: universal Location: 5226-7496 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)