CRISPRone

CRISPRone report for GCA_000599105.1_ASM59910v1

♦ Seq 1: JGDI01000730.1 Bacteroides fragilis str. S13 L11 gbfS13L11.contig.747, whole genome shotgun sequence

⇒Summary: seq-len = 1095 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-716 bp Zoom in on locus 1 x11 CRISPR array Location: 0-716 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 0-716 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-716 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JGDI01000282.1 Bacteroides fragilis str. S13 L11 gbfS13L11.contig.289, whole genome shotgun sequence

⇒Summary: seq-len = 2753 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 46-436 bp Zoom in on locus 1 x6 CRISPR array Location: 46-436 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 46-436 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 46-436 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JGDI01000298.1 Bacteroides fragilis str. S13 L11 gbfS13L11.contig.306, whole genome shotgun sequence

⇒Summary: seq-len = 20816 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19730-20656 bp Zoom in on locus 1 x15 CRISPR array Location: 19730-20656 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 19730-20656 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 19730-20656 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JGDI01000577.1 Bacteroides fragilis str. S13 L11 gbfS13L11.contig.591, whole genome shotgun sequence

⇒Summary: seq-len = 342 bp; # of CRISPR array = 0; # of cas gene = 1  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-340 bp Zoom in on locus 1 Gene: pfam01867:cas1 Type: universal Location: 2-340 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: JGDI01000394.1 Bacteroides fragilis str. S13 L11 gbfS13L11.contig.405, whole genome shotgun sequence

⇒Summary: seq-len = 12583 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 343-3956 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 343-1011 bp Gene: unk Type: unknown Location: 1014-1787 bp Gene: unk Type: unknown Location: 1795-3060 bp Gene: pfam13280:WYL Type: other Location: 3057-3956 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: JGDI01000768.1 Bacteroides fragilis str. S13 L11 gbfS13L11.contig.785, whole genome shotgun sequence

⇒Summary: seq-len = 1314 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-1312 bp Zoom in on locus 1 Gene: pfam01930:cas4 Type: Type-I Location: 1-498 bp Gene: mkCas0088:cas7 Type: Subtype-I-B Location: 563-1312 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: JGDI01000300.1 Bacteroides fragilis str. S13 L11 gbfS13L11.contig.308, whole genome shotgun sequence

⇒Summary: seq-len = 2440 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-2439 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 1-1392 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 1382-1945 bp Gene: cd09652:cas6 Type: other Location: 1957-2439 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: JGDI01000760.1 Bacteroides fragilis str. S13 L11 gbfS13L11.contig.777, whole genome shotgun sequence

⇒Summary: seq-len = 651 bp; # of CRISPR array = 0; # of cas gene = 1  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-293 bp Zoom in on locus 1 Gene: cd09725:cas2 Type: universal Location: 3-293 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: JGDI01000299.1 Bacteroides fragilis str. S13 L11 gbfS13L11.contig.307, whole genome shotgun sequence

⇒Summary: seq-len = 1127 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38-1125 bp Zoom in on locus 1 Gene: cd09725:cas2 Type: universal Location: 38-301 bp Gene: cd09722:cas1 Type: universal Location: 304-1125 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)