CRISPRone

CRISPRone report for GCA_000599125.1_ASM59912v1

♦ Seq 1: JGDJ01000013.1 Bacteroides fragilis str. S36L11 gbfS36L11.contig.12, whole genome shotgun sequence

⇒Summary: seq-len = 317 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 214-318 bp Zoom in on locus 1 x2 CRISPR array Location: 214-318 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 214-318 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 214-318 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JGDJ01000219.1 Bacteroides fragilis str. S36L11 gbfS36L11.contig.220, whole genome shotgun sequence

⇒Summary: seq-len = 23632 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-1717 bp Zoom in on locus 1 x25 CRISPR array Location: 2-1717 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 2-1717 bp Num of repeats: 25 Spacers: s1-s24 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2-1717 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JGDJ01000018.1 Bacteroides fragilis str. S36L11 gbfS36L11.contig.17, whole genome shotgun sequence

⇒Summary: seq-len = 1266 bp; # of CRISPR array = 0; # of cas gene = 1  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-1263 bp Zoom in on locus 1 Gene: cd09634:cas1 Type: universal Location: 1-1263 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JGDJ01000177.1 Bacteroides fragilis str. S36L11 gbfS36L11.contig.177, whole genome shotgun sequence

⇒Summary: seq-len = 60285 bp; # of CRISPR array = 0; # of cas gene = 4  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5362-19465 bp Zoom in on locus 1 Gene: pfam00078:RT Type: other Location: 5362-7173 bp Gene: pfam00078:RT Type: other Location: 11156-12883 bp Gene: unk Type: unknown Location: 12864-13694 bp Gene: unk Type: unknown Location: 13873-14022 bp Gene: pfam00078:RT Type: other Location: 14278-15939 bp Gene: unk Type: unknown Location: 15936-17075 bp Gene: unk Type: unknown Location: 17253-17441 bp Gene: pfam00078:RT Type: other Location: 17633-19465 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: JGDJ01000183.1 Bacteroides fragilis str. S36L11 gbfS36L11.contig.183, whole genome shotgun sequence

⇒Summary: seq-len = 8859 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8495-8738 bp Zoom in on locus 1 x4 CRISPR array Location: 8495-8738 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 8495-8738 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8495-8738 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: JGDJ01000080.1 Bacteroides fragilis str. S36L11 gbfS36L11.contig.80, whole genome shotgun sequence

⇒Summary: seq-len = 5177 bp; # of CRISPR array = 0; # of cas gene = 5  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 261-5175 bp Zoom in on locus 1 Gene: pfam12469:cas10 Type: Subtype-III-B Location: 261-2063 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 2056-3195 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 3215-4054 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 4067-4477 bp Gene: cd09726:csm3gr7 Type: Subtype-III-D Location: 4480-5175 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: JGDJ01000255.1 Bacteroides fragilis str. S36L11 gbfS36L11.contig.256, whole genome shotgun sequence

⇒Summary: seq-len = 36216 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 75-3688 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 75-743 bp Gene: unk Type: unknown Location: 746-1519 bp Gene: unk Type: unknown Location: 1527-2792 bp Gene: pfam13280:WYL Type: other Location: 2789-3688 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)