CRISPRone

CRISPRone report for GCA_000599145.2_ASM59914v2

♦ Seq 1: JGDL01000035.1 Bacteroides fragilis str. 1007-1-F #7 gbf10071F7.contig.34, whole genome shotgun sequence

⇒Summary: seq-len = 188322 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28167-42881 bp Zoom in on locus 1 x16 Gene: cls000004:cas6 Type: other Location: 28167-28835 bp Gene: unk Type: unknown Location: 28853-29479 bp Gene: unk Type: unknown Location: 29455-30234 bp Gene: cash17:cash17 Type: Type- Location: 30279-31706 bp Gene: unk Type: unknown Location: 31703-32182 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 32196-33605 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 33610-35412 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 35405-36544 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 36564-37403 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 37416-37826 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 37829-38773 bp Gene: cd09634:cas1 Type: universal Location: 38793-41063 bp Gene: cd09725:cas2 Type: universal Location: 41057-41347 bp CRISPR array Location: 41795-42881 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 41795-42881 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 41795-42881 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JGDL01000036.1 Bacteroides fragilis str. 1007-1-F #7 gbf10071F7.contig.35, whole genome shotgun sequence

⇒Summary: seq-len = 46745 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20476-29263 bp Zoom in on locus 1 x15 CRISPR array Location: 20476-21402 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 20476-21402 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09725:cas2 Type: universal Location: 21615-21878 bp Gene: cd09722:cas1 Type: universal Location: 21881-22894 bp Gene: pfam01930:cas4 Type: Type-I Location: 22891-23403 bp Gene: mkCas0088:cas7 Type: Subtype-I-B Location: 23468-24526 bp Gene: mkCas0111:cas8b6 Type: Subtype-I-B Location: 24539-25864 bp Gene: COG1203:cas3 Type: Type-I Location: 25868-28027 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 28017-28580 bp Gene: cd09652:cas6 Type: other Location: 28592-29263 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 20476-21402 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JGDL01000050.1 Bacteroides fragilis str. 1007-1-F #7 gbf10071F7.contig.49, whole genome shotgun sequence

⇒Summary: seq-len = 423731 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 105020-108633 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 105020-105688 bp Gene: unk Type: unknown Location: 105691-106464 bp Gene: unk Type: unknown Location: 106472-107737 bp Gene: pfam13280:WYL Type: other Location: 107734-108633 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JGDL01000015.1 Bacteroides fragilis str. 1007-1-F #7 gbf10071F7.contig.14, whole genome shotgun sequence

⇒Summary: seq-len = 256965 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23641-25353 bp Zoom in on locus 1 Gene: mkCas0179:cas2 Type: universal Location: 23641-23955 bp Gene: unk Type: unknown Location: 23955-24332 bp Gene: pfam00078:RT Type: other Location: 24313-25353 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)