CRISPRone

CRISPRone report for GCA_000599225.1_ASM59922v1

♦ Seq 1: JGDY01000025.1 Bacteroides fragilis str. S6L3 gbfS6L3.contig.24, whole genome shotgun sequence

⇒Summary: seq-len = 300266 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 67512-67755 bp Zoom in on locus 1 x4 CRISPR array Location: 67512-67755 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 67512-67755 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 67512-67755 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JGDY01000030.1 Bacteroides fragilis str. S6L3 gbfS6L3.contig.29, whole genome shotgun sequence

⇒Summary: seq-len = 74919 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28403-42268 bp Zoom in on locus 1 x3 Gene: cls000004:cas6 Type: other Location: 28403-29134 bp Gene: unk Type: unknown Location: 29152-29778 bp Gene: unk Type: unknown Location: 29754-30533 bp Gene: cash17:cash17 Type: Type- Location: 30578-32005 bp Gene: unk Type: unknown Location: 32002-32481 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 32495-33904 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 33909-35711 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 35704-36843 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 36863-37702 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 37715-38125 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 38122-39072 bp Gene: cd09634:cas1 Type: universal Location: 39092-41362 bp Gene: cd09725:cas2 Type: universal Location: 41356-41646 bp CRISPR array Location: 42094-42268 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 42094-42268 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 42094-42268 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JGDY01000038.1 Bacteroides fragilis str. S6L3 gbfS6L3.contig.37, whole genome shotgun sequence

⇒Summary: seq-len = 125963 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 89065-92678 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 89065-89733 bp Gene: unk Type: unknown Location: 89736-90509 bp Gene: unk Type: unknown Location: 90517-91782 bp Gene: pfam13280:WYL Type: other Location: 91779-92678 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)