CRISPRone

CRISPRone report for GCA_000599245.1_ASM59924v1

♦ Seq 1: JGDZ01000075.1 Bacteroides fragilis str. S6R6 gbfS6R6.contig.75, whole genome shotgun sequence

⇒Summary: seq-len = 357342 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 89140-92753 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 89140-89808 bp Gene: unk Type: unknown Location: 89811-90584 bp Gene: unk Type: unknown Location: 90592-91857 bp Gene: pfam13280:WYL Type: other Location: 91854-92753 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JGDZ01000065.1 Bacteroides fragilis str. S6R6 gbfS6R6.contig.65, whole genome shotgun sequence

⇒Summary: seq-len = 73956 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 27875-41740 bp Zoom in on locus 1 x3 Gene: cls000004:cas6 Type: other Location: 27875-28606 bp Gene: unk Type: unknown Location: 28624-29250 bp Gene: unk Type: unknown Location: 29226-30005 bp Gene: cash17:cash17 Type: Type- Location: 30050-31477 bp Gene: unk Type: unknown Location: 31474-31953 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 31967-33376 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 33381-35183 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 35176-36315 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 36335-37174 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 37187-37597 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 37594-38544 bp Gene: cd09634:cas1 Type: universal Location: 38564-40834 bp Gene: cd09725:cas2 Type: universal Location: 40828-41118 bp CRISPR array Location: 41566-41740 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 41566-41740 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 41566-41740 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JGDZ01000060.1 Bacteroides fragilis str. S6R6 gbfS6R6.contig.60, whole genome shotgun sequence

⇒Summary: seq-len = 202748 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 152968-153211 bp Zoom in on locus 1 x4 CRISPR array Location: 152968-153211 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 152968-153211 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 152968-153211 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)