CRISPRone

CRISPRone report for GCA_000599265.1_ASM59926v1

♦ Seq 1: JGEB01000075.1 Bacteroides fragilis str. 1007-1-F #3 gbf10071F3.contig.74, whole genome shotgun sequence

⇒Summary: seq-len = 705178 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 658300-673077 bp Zoom in on locus 1 x16 Gene: cls000004:cas6 Type: other Location: 658300-659031 bp Gene: unk Type: unknown Location: 659049-659675 bp Gene: unk Type: unknown Location: 659651-660430 bp Gene: cash17:cash17 Type: Type- Location: 660475-661902 bp Gene: unk Type: unknown Location: 661899-662378 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 662392-663801 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 663806-665608 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 665601-666740 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 666760-667599 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 667612-668022 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 668019-668969 bp Gene: cd09634:cas1 Type: universal Location: 668989-671259 bp Gene: cd09725:cas2 Type: universal Location: 671253-671543 bp CRISPR array Location: 671991-673077 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 671991-673077 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 671991-673077 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JGEB01000088.1 Bacteroides fragilis str. 1007-1-F #3 gbf10071F3.contig.87, whole genome shotgun sequence

⇒Summary: seq-len = 269308 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 120609-124222 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 120609-121277 bp Gene: unk Type: unknown Location: 121280-122053 bp Gene: unk Type: unknown Location: 122061-123326 bp Gene: pfam13280:WYL Type: other Location: 123323-124222 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JGEB01000065.1 Bacteroides fragilis str. 1007-1-F #3 gbf10071F3.contig.64, whole genome shotgun sequence

⇒Summary: seq-len = 401371 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 127303-129015 bp Zoom in on locus 1 Gene: mkCas0179:cas2 Type: universal Location: 127303-127617 bp Gene: unk Type: unknown Location: 127617-127994 bp Gene: pfam00078:RT Type: other Location: 127975-129015 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JGEB01000077.1 Bacteroides fragilis str. 1007-1-F #3 gbf10071F3.contig.76, whole genome shotgun sequence

⇒Summary: seq-len = 237619 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23257-32044 bp Zoom in on locus 1 x15 CRISPR array Location: 23257-24183 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 23257-24183 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09725:cas2 Type: universal Location: 24396-24659 bp Gene: cd09722:cas1 Type: universal Location: 24662-25675 bp Gene: pfam01930:cas4 Type: Type-I Location: 25672-26229 bp Gene: mkCas0088:cas7 Type: Subtype-I-B Location: 26249-27307 bp Gene: mkCas0111:cas8b6 Type: Subtype-I-B Location: 27320-28645 bp Gene: COG1203:cas3 Type: Type-I Location: 28649-30808 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 30798-31361 bp Gene: cd09652:cas6 Type: other Location: 31373-32044 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 23257-24183 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)