CRISPRone

CRISPRone report for GCA_000599285.2_ASM59928v2

♦ Seq 1: JGEE01000010.1 Bacteroides fragilis str. 1009-4-F #7 gbf10094F7.contig.9, whole genome shotgun sequence

⇒Summary: seq-len = 660 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-661 bp Zoom in on locus 1 x9 CRISPR array Location: 1-661 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 1-661 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-661 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JGEE01000031.1 Bacteroides fragilis str. 1009-4-F #7 gbf10094F7.contig.30, whole genome shotgun sequence

⇒Summary: seq-len = 749526 bp; # of CRISPR array = 1; # of cas gene = 7  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 160010-170139 bp 2 Locus 2: 720812-723195 bp Zoom in on locus 1 Zoom in on locus 2 x10 Gene: mkCas0123:csx19 Type: Subtype-III-D Location: 160010-161671 bp Gene: unk Type: unknown Location: 161706-161867 bp Gene: unk Type: unknown Location: 162008-162184 bp Gene: pfam13280:WYL Type: other Location: 162950-163960 bp Gene: cd09710:cas3 Type: Subtype-I-D Location: 163999-170139 bp CRISPR array Location: 720812-721421 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 720812-721421 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09725:cas2 Type: universal Location: 721634-721897 bp Gene: cd09722:cas1 Type: universal Location: 721900-722139 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 722132-722512 bp Gene: cd09652:cas6 Type: other Location: 722524-723195 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 720812-721421 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JGEE01000037.1 Bacteroides fragilis str. 1009-4-F #7 gbf10094F7.contig.36, whole genome shotgun sequence

⇒Summary: seq-len = 219761 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 124650-128263 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 124650-125318 bp Gene: unk Type: unknown Location: 125321-126094 bp Gene: unk Type: unknown Location: 126102-127367 bp Gene: pfam13280:WYL Type: other Location: 127364-128263 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JGEE01000045.1 Bacteroides fragilis str. 1009-4-F #7 gbf10094F7.contig.44, whole genome shotgun sequence

⇒Summary: seq-len = 447763 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23-9278 bp Zoom in on locus 1 x32 CRISPR array Location: 23-2443 bp Num of repeats: 32 Spacers: s1-s31 CRISPR array Location: 23-2443 bp Num of repeats: 32 Spacers: s1-s31 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 2552-2884 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 2888-3820 bp Gene: unk Type: unknown Location: 3940-4248 bp Gene: unk Type: unknown Location: 4315-4839 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 4855-9165 bp antiRepeat Location: 9233-9278 bp Strand: - Match length: 26 bp Mismatch: 21 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 23-2443 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: JGEE01000044.1 Bacteroides fragilis str. 1009-4-F #7 gbf10094F7.contig.43, whole genome shotgun sequence

⇒Summary: seq-len = 2180 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1036-2158 bp Zoom in on locus 1 x15 CRISPR array Location: 1036-2158 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1036-2158 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1036-2158 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)