CRISPRone

CRISPRone report for GCA_000599305.1_ASM59930v1

♦ Seq 1: JGEL01000049.1 Bacteroides fragilis str. S23L24 gbfS23L24.contig.48, whole genome shotgun sequence

⇒Summary: seq-len = 98883 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 35094-38707 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 35094-35762 bp Gene: unk Type: unknown Location: 35765-36538 bp Gene: unk Type: unknown Location: 36546-37811 bp Gene: pfam13280:WYL Type: other Location: 37808-38707 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JGEL01000032.1 Bacteroides fragilis str. S23L24 gbfS23L24.contig.31, whole genome shotgun sequence

⇒Summary: seq-len = 98793 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 51937-67146 bp Zoom in on locus 1 x22 Gene: cls000004:cas6 Type: other Location: 51937-52668 bp Gene: unk Type: unknown Location: 52686-53312 bp Gene: unk Type: unknown Location: 53288-54067 bp Gene: cash17:cash17 Type: Type- Location: 54112-55539 bp Gene: unk Type: unknown Location: 55536-56015 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 56029-57438 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 57443-59245 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 59238-60377 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 60397-61236 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 61249-61659 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 61656-62606 bp Gene: cd09634:cas1 Type: universal Location: 62626-64896 bp Gene: cd09725:cas2 Type: universal Location: 64890-65180 bp CRISPR array Location: 65628-67146 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 65628-67146 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 65628-67146 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JGEL01000061.1 Bacteroides fragilis str. S23L24 gbfS23L24.contig.60, whole genome shotgun sequence

⇒Summary: seq-len = 69710 bp; # of CRISPR array = 0; # of cas gene = 1  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38272-38553 bp Zoom in on locus 1 Gene: pfam09827:cas2 Type: universal Location: 38272-38553 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JGEL01000056.1 Bacteroides fragilis str. S23L24 gbfS23L24.contig.55, whole genome shotgun sequence

⇒Summary: seq-len = 139139 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 777-8619 bp Zoom in on locus 1 x15 CRISPR array Location: 777-1897 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 777-1897 bp Num of repeats: 15 Spacers: s1-s14 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 2006-2338 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 2342-3274 bp Gene: unk Type: unknown Location: 3394-3702 bp Gene: unk Type: unknown Location: 3769-4293 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 4309-8619 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 777-1897 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)