CRISPRone

CRISPRone report for GCA_000599345.1_ASM59934v1

♦ Seq 1: JGEP01000065.1 Bacteroides fragilis str. S36L12 gbfS36L12.contig.64, whole genome shotgun sequence

⇒Summary: seq-len = 254378 bp; # of CRISPR array = 1; # of cas gene = 13  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-20256 bp 2 Locus 2: 123226-134540 bp Zoom in on locus 1 Zoom in on locus 2 x25 Gene: pfam00078:RT Type: other Location: 3-1187 bp Gene: pfam00078:RT Type: other Location: 6153-7964 bp Gene: pfam00078:RT Type: other Location: 11947-13674 bp Gene: unk Type: unknown Location: 13655-14485 bp Gene: unk Type: unknown Location: 14664-14813 bp Gene: pfam00078:RT Type: other Location: 15069-16730 bp Gene: unk Type: unknown Location: 16727-17866 bp Gene: unk Type: unknown Location: 18044-18232 bp Gene: pfam00078:RT Type: other Location: 18424-20256 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 123226-124635 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 124640-126442 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 126435-127574 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 127594-128433 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 128446-128856 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 128859-129803 bp Gene: cd09634:cas1 Type: universal Location: 129823-132093 bp Gene: cd09725:cas2 Type: universal Location: 132087-132377 bp CRISPR array Location: 132825-134540 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 132825-134540 bp Num of repeats: 25 Spacers: s1-s24 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 132825-134540 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JGEP01000078.1 Bacteroides fragilis str. S36L12 gbfS36L12.contig.77, whole genome shotgun sequence

⇒Summary: seq-len = 266998 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 176176-179789 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 176176-176844 bp Gene: unk Type: unknown Location: 176847-177620 bp Gene: unk Type: unknown Location: 177628-178893 bp Gene: pfam13280:WYL Type: other Location: 178890-179789 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JGEP01000059.1 Bacteroides fragilis str. S36L12 gbfS36L12.contig.58, whole genome shotgun sequence

⇒Summary: seq-len = 36805 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20054-20297 bp Zoom in on locus 1 x4 CRISPR array Location: 20054-20297 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 20054-20297 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 20054-20297 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)