CRISPRone

CRISPRone report for GCA_000599365.1_ASM59936v1

♦ Seq 1: JGER01000049.1 Bacteroides fragilis str. S38L5 gbfS38L5.contig.48, whole genome shotgun sequence

⇒Summary: seq-len = 308083 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 746-9078 bp Zoom in on locus 1 x20 CRISPR array Location: 746-2243 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 746-2243 bp Num of repeats: 20 Spacers: s1-s19 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 2352-2684 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 2688-3620 bp Gene: unk Type: unknown Location: 3740-4048 bp Gene: unk Type: unknown Location: 4115-4639 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 4655-8965 bp antiRepeat Location: 9033-9078 bp Strand: - Match length: 26 bp Mismatch: 21 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 746-2243 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JGER01000033.1 Bacteroides fragilis str. S38L5 gbfS38L5.contig.32, whole genome shotgun sequence

⇒Summary: seq-len = 138288 bp; # of CRISPR array = 1; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 108982-111298 bp Zoom in on locus 1 x9 CRISPR array Location: 108982-109524 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 108982-109524 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09725:cas2 Type: universal Location: 109737-110000 bp Gene: cd09722:cas1 Type: universal Location: 110003-110242 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 110235-110615 bp Gene: cd09652:cas6 Type: other Location: 110627-111298 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 108982-109524 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JGER01000041.1 Bacteroides fragilis str. S38L5 gbfS38L5.contig.40, whole genome shotgun sequence

⇒Summary: seq-len = 474688 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 123447-127060 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 123447-124115 bp Gene: unk Type: unknown Location: 124118-124891 bp Gene: unk Type: unknown Location: 124899-126164 bp Gene: pfam13280:WYL Type: other Location: 126161-127060 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JGER01000031.1 Bacteroides fragilis str. S38L5 gbfS38L5.contig.30, whole genome shotgun sequence

⇒Summary: seq-len = 24541 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 190-2252 bp Zoom in on locus 1 x30 CRISPR array Location: 190-2252 bp Num of repeats: 30 Spacers: s1-s29 CRISPR array Location: 190-2252 bp Num of repeats: 30 Spacers: s1-s29 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 190-2252 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: JGER01000077.1 Bacteroides fragilis str. S38L5 gbfS38L5.contig.76, whole genome shotgun sequence

⇒Summary: seq-len = 8594 bp; # of CRISPR array = 0; # of cas gene = 7  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-8060 bp Zoom in on locus 1 Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 2-601 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 606-2408 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 2401-3540 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 3560-4399 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 4413-4823 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 4826-5770 bp Gene: cd09634:cas1 Type: universal Location: 5790-8060 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)