CRISPRone

CRISPRone report for GCA_000599385.1_ASM59938v1

♦ Seq 1: JGES01000028.1 Bacteroides fragilis str. S6L8 gbfS6L8.contig.27, whole genome shotgun sequence

⇒Summary: seq-len = 716595 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 244734-244977 bp Zoom in on locus 1 x4 CRISPR array Location: 244734-244977 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 244734-244977 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 244734-244977 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JGES01000032.1 Bacteroides fragilis str. S6L8 gbfS6L8.contig.31, whole genome shotgun sequence

⇒Summary: seq-len = 162413 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28093-41958 bp Zoom in on locus 1 x3 Gene: cls000004:cas6 Type: other Location: 28093-28824 bp Gene: unk Type: unknown Location: 28842-29468 bp Gene: unk Type: unknown Location: 29444-30223 bp Gene: cash17:cash17 Type: Type- Location: 30268-31695 bp Gene: unk Type: unknown Location: 31692-32171 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 32185-33594 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 33599-35401 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 35394-36533 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 36553-37392 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 37405-37815 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 37812-38762 bp Gene: cd09634:cas1 Type: universal Location: 38782-41052 bp Gene: cd09725:cas2 Type: universal Location: 41046-41336 bp CRISPR array Location: 41784-41958 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 41784-41958 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 41784-41958 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JGES01000043.1 Bacteroides fragilis str. S6L8 gbfS6L8.contig.42, whole genome shotgun sequence

⇒Summary: seq-len = 193862 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 89109-92722 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 89109-89777 bp Gene: unk Type: unknown Location: 89780-90553 bp Gene: unk Type: unknown Location: 90561-91826 bp Gene: pfam13280:WYL Type: other Location: 91823-92722 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)