CRISPRone

CRISPRone report for GCA_000601015.1_ASM60101v1

♦ Seq 1: JGVC01000088.1 Bacteroides fragilis str. S6L5 gbfS6L5.contig.103, whole genome shotgun sequence

⇒Summary: seq-len = 5222 bp; # of CRISPR array = 0; # of cas gene = 5  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-4966 bp Zoom in on locus 1 Gene: cd09726:csm3gr7 Type: Subtype-III-D Location: 1-747 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 750-1160 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 1173-2012 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 2032-3171 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 3164-4966 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JGVC01000152.1 Bacteroides fragilis str. S6L5 gbfS6L5.contig.171, whole genome shotgun sequence

⇒Summary: seq-len = 54154 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4617-4860 bp Zoom in on locus 1 x4 CRISPR array Location: 4617-4860 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 4617-4860 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4617-4860 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JGVC01000208.1 Bacteroides fragilis str. S6L5 gbfS6L5.contig.227, whole genome shotgun sequence

⇒Summary: seq-len = 136952 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 41852-45465 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 41852-42520 bp Gene: unk Type: unknown Location: 42523-43296 bp Gene: unk Type: unknown Location: 43304-44569 bp Gene: pfam13280:WYL Type: other Location: 44566-45465 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JGVC01000178.1 Bacteroides fragilis str. S6L5 gbfS6L5.contig.197, whole genome shotgun sequence

⇒Summary: seq-len = 10921 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 369-543 bp Zoom in on locus 1 x3 CRISPR array Location: 369-543 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 369-543 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 369-543 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: JGVC01000066.1 Bacteroides fragilis str. S6L5 gbfS6L5.contig.79, whole genome shotgun sequence

⇒Summary: seq-len = 1178 bp; # of CRISPR array = 0; # of cas gene = 1  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 56-1177 bp Zoom in on locus 1 Gene: cd09634:cas1 Type: universal Location: 56-1177 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)