CRISPRone

CRISPRone report for GCA_000601035.1_ASM60103v1

♦ Seq 1: JGVD01000077.1 Bacteroides fragilis str. 1007-1-F #5 gbf10071F5.contig.77, whole genome shotgun sequence

⇒Summary: seq-len = 245184 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 103262-106875 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 103262-103930 bp Gene: unk Type: unknown Location: 103933-104706 bp Gene: unk Type: unknown Location: 104714-105979 bp Gene: pfam13280:WYL Type: other Location: 105976-106875 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JGVD01000061.1 Bacteroides fragilis str. 1007-1-F #5 gbf10071F5.contig.61, whole genome shotgun sequence

⇒Summary: seq-len = 34160 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25447-34159 bp Zoom in on locus 1 x15 CRISPR array Location: 25447-26373 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 25447-26373 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09725:cas2 Type: universal Location: 26586-26849 bp Gene: cd09722:cas1 Type: universal Location: 26852-27865 bp Gene: pfam01930:cas4 Type: Type-I Location: 27862-28374 bp Gene: mkCas0088:cas7 Type: Subtype-I-B Location: 28439-29497 bp Gene: mkCas0111:cas8b6 Type: Subtype-I-B Location: 29510-30835 bp Gene: COG1203:cas3 Type: Type-I Location: 30839-32998 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 32988-33551 bp Gene: cd09652:cas6 Type: other Location: 33563-34159 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 25447-26373 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JGVD01000059.1 Bacteroides fragilis str. 1007-1-F #5 gbf10071F5.contig.59, whole genome shotgun sequence

⇒Summary: seq-len = 31902 bp; # of CRISPR array = 1; # of cas gene = 8  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-9903 bp Zoom in on locus 1 x16 Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 1-627 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 632-2434 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 2427-3566 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 3586-4425 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 4438-4848 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 4845-5795 bp Gene: cd09634:cas1 Type: universal Location: 5815-8085 bp Gene: cd09725:cas2 Type: universal Location: 8079-8369 bp CRISPR array Location: 8817-9903 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 8817-9903 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8817-9903 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JGVD01000025.1 Bacteroides fragilis str. 1007-1-F #5 gbf10071F5.contig.24, whole genome shotgun sequence

⇒Summary: seq-len = 32396 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 15789-17501 bp Zoom in on locus 1 Gene: mkCas0179:cas2 Type: universal Location: 15789-16103 bp Gene: unk Type: unknown Location: 16103-16480 bp Gene: pfam00078:RT Type: other Location: 16461-17501 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)